AT1G42440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:15895528..15899939 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89460.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.23 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||
| Length | 793 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRSRVQVNK AHKTRFSSKS SRNLHRTNLQ DSGRIGKSDS NYVKGAKAAR VQRGKMLREQ KRAAVLKEKR ASGGINSAPR VIVLFPLSAS VELNSLGEDV 101: LKLLSSDGSG IASSTVASSE YKLRATVLKA PHGDLLTCME MAKVADLMAF VASASAPWEE NSSNFIDSFG SQCLSVFRSI GLPSTTVLIR DLPSDVKKKN 201: EMKKMCASQL ASEFPEDCKF YPADTRDELH KFMWLFKAQR LTVPHWRSQR SYIVARKAGM LVDDESSGKC TLLLSGYLRA RKLSVNQLVH VSGVGDFQFS 301: KIEVLKDPFP LNERKNQNSM ELDDSHDEEV LKSLVPDPMK QEPLVIENTP DPLAGEQTWP TEEEMAEADK NQKQGRLKKK TLPRGTSEYQ AAWIVDETDE 401: EDSDNGDSDD NGMVLDRGED SNQEGMYDQE FEDDGKSLNL RDIDTETQNE SEMVDDEDLT EEQIKDEIKK IKEAYADDEE FPDEVETPID VPARRRFAKY 501: RGLKSFRTSS WDPNESLPQD YARIFAFDNV ARTQKLVLKQ ALKMEEEDRD DCVPIGSYVR LHIKEVPLGA ASKLSSLVNT TKPIIGFGLL QHESKMSVLH 601: FSVKKYDGYE APIKTKEELM FHVGFRQFIA RPVFATDNFS SDKHKMERFL HPGCFSLASI YGPISFPPLP LVVLKISEGS DPPAIAALGS LKSVEPNKII 701: LKKIILTGYP QRVSKMKASV RYMFHNPEDV KWFKPVEVWS KCGRRGRVKE PVGTHGAMKC IFNGVVQQHD VVCMNLYKRA YPKWPERLYP QLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)