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AT5G27560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF1995)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFU2eggNOG:ENOG4111US0EMBL:AF370259EMBL:AY063075EMBL:CP002688EnsemblPlants:AT5G27560EnsemblPlants:AT5G27560.1
entrez:832816GeneID:832816GO:GO:0009507Gramene:AT5G27560.1hmmpanther:PTHR35509hmmpanther:PTHR35509:SF1HOGENOM:HOG000265114
InterPro:IPR018962KEGG:ath:AT5G27560OMA:RAKFGKFPfam:PF09353PhylomeDB:Q94K68Proteomes:UP000006548RefSeq:NP_568497.1
STRING:3702.AT5G27560.1TAIR:AT5G27560UniGene:At.19067UniProt:Q94K68
Coordinates (TAIR10) chr5:+:9731758..9733644
Molecular Weight (calculated) 38047.90 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.28
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYSSVPSCF HGYLLHRCSF STTQFFSGSL SCGFSASTNS RLRTCVKFEK FQGDSPLEQN TSVSSSSSVS QELPLEEAQD QLEEEEDDDD CLPNDLEGAV
101: RQSGEAGAAF VNSGGNRAIV ELLIPQLQFL DDEGAQAELW DLSRVFLETL IKETGCERVK AVFPDAGAAA LLKYRWKDAT FGFASLSDRK PVEKEDEIIV
201: MVVPDYQMLE YVEKIANGLA DDPPRPLIMW NPRLISEEVG VGFNVRKLRR YFLSSFTTVY SMRPLAAGAV FRCYPGKWKV FYDNKDRPGR YLLAKELIGR
301: PDAEDLEIIY GGVEEKSEEG PSLMSQAAGI FSSINRFMKS M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)