AT1G78915.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 854 Blast hits to 777 proteins in 206 species: Archae - 104; Bacteria - 466; Metazoa - 6; Fungi - 10; Plants - 101; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:29667729..29671081 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42581.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.33 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||
| Length | 385 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLMTLAATTS VSFNSKLLLF RIRCSDSNPK RGFGSKKEEK DPALQQRKSS SKQSVSVPRK APGLNTQFEG KSGRSFDIDF DERLENIRRS ALEQKKTEVV 101: KEFGPIDYDA PVKSDQKTIG LGTKVGVGIA VVVFGLVFAL GDFLPTGSDS PTKNTTVVKN QISEEEKATL QQRLKEFETT LNGTPQDQAA LEGAAVTLTE 201: LGDYSRAAAF LEKLAKERPT DPDVFRLLGE VNYELNNYEG SIAAYKISEK VSKGIDLEVT RGLMNAYLAA KKPDEAVKFL LDTRERLNTK KTSTTDSVTD 301: ETNLDPIQVE LLLGKAYSDW GHISDAIAVY DQLISAHPED FRGYLAKGII LRENGSRGDA ERMFIQARFF APNKAKALVD RYSKL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)