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AT5G25760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.919
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : peroxin4
Curator
Summary (TAIR10)
mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.
Computational
Description (TAIR10)
peroxin4 (PEX4); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 29 (TAIR:AT2G16740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G25760-MONOMERBioCyc:ARA:GQT-755-MONOMERBioGrid:17920EC:2.3.2.23eggNOG:COG5078eggNOG:KOG0417EMBL:AC005405
EMBL:AY084297EMBL:BT025616EMBL:CP002688EMBL:DQ027035EnsemblPlants:AT5G25760EnsemblPlants:AT5G25760.1EnsemblPlants:AT5G25760.2
entrez:832645Gene3D:3.10.110.10GeneID:832645Genevisible:Q8LGF7GO:GO:0004842GO:GO:0005524GO:GO:0005778
GO:GO:0006635GO:GO:0007031GO:GO:0016558Gramene:AT5G25760.1Gramene:AT5G25760.2hmmpanther:PTHR24067hmmpanther:PTHR24067:SF145
HOGENOM:HOG000233455IntAct:Q8LGF7InterPro:IPR000608InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT5G25760KO:K10689
OMA:HPNIHFKPaxDb:Q8LGF7Pfam:PF00179Pfam:Q8LGF7Pfscan:PS50127PhylomeDB:Q8LGF7PRIDE:Q8LGF7
PRO:PR:Q8LGF7PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:Q8LGF7Proteomes:UP000006548RefSeq:NP_001031939.1RefSeq:NP_568476.1
scanprosite:PS00183SMR:Q8LGF7STRING:3702.AT5G25760.1SUPFAM:SSF54495TAIR:AT5G25760tair10-symbols:PEX4tair10-symbols:UBC21
UniGene:At.20548UniGene:At.30893UniPathway:UPA00143UniProt:Q8LGF7
Coordinates (TAIR10) chr5:+:8967983..8969173
Molecular Weight (calculated) 17709.40 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.27
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MQASRARLFK EYKEVQREKV ADPDIQLICD DTNIFKWTAL IKGPSETPYE GGVFQLAFSV PEPYPLQPPQ VRFLTKIFHP NVHFKTGEIC LDILKNAWSP
101: AWTLQSVCRA IIALMAHPEP DSPLNCDSGN LLRSGDVRGF NSMAQMYTRL AAMPKKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)