AT5G18430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: Li-tolerant lipase 1 (TAIR:AT3G04290.1); Has 3282 Blast hits to 3244 proteins in 154 species: Archae - 0; Bacteria - 202; Metazoa - 0; Fungi - 2; Plants - 3065; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6110363..6111934 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40125.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.40 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.00 | ||||||||||||||||||||||||||||||||||||||||
| Length | 362 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTISTVIAFM SMFLVFVMSG PIVVEGRAFF VFGDSLVDSG NNNYLVTTAR ADSPPYGIDF PTRRPTGRFS NGLNIPDLIS EAIGNEEPPL PYLSPELRGR 101: SLLNGANFAS AGIGILNDTG FQFINIIRMY QQLDYFQQYQ QRVSRLIGKP QTQRLVSQAL VLITVGGNDF VNNYFLFPYS ARSRQFTLPD YVRLLISEYK 201: KILLRLNSLG VGRVLVTGAG PLGCAPAELA RSGTSNGRCS AELQRAASLY DPQLLQMINE LNKKIGRNVF IAANTNQMQE DFLSTPRRYG FVTSKVACCG 301: QGPYNGMGLC TVLSNLCPNR ELYVFWDAFH PTEKANRMIV RHILTGTTKY MNPMNLSSAL AL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)