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AT5G17270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.326
plasma membrane 0.306
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein prenylyltransferase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G37130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNXBeggNOG:KOG1128EMBL:AB005238EMBL:CP002688EnsemblPlants:AT5G17270EnsemblPlants:AT5G17270.1entrez:831592
Gene3D:1.25.40.10GeneID:831592Gramene:AT5G17270.1hmmpanther:PTHR16193HOGENOM:HOG000030273InterPro:IPR011990InterPro:IPR013026
InterPro:IPR019734KEGG:ath:AT5G17270ncoils:CoilOMA:YARWHKLPfam:PF13181Pfam:PF13414Pfscan:PS50005
Pfscan:PS50293PhylomeDB:Q9FFI4PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_197229.1SMART:SM00028
SMR:Q9FFI4STRING:3702.AT5G17270.1SUPFAM:SSF48452TAIR:AT5G17270UniGene:At.54881UniProt:Q9FFI4
Coordinates (TAIR10) chr5:+:5679995..5685597
Molecular Weight (calculated) 101009.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.21
Length 899 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDGEVEILR GYELRLLRCT VSFPQTGSPL ESQPLDGTQS GTHPHDSLIT SLLSSIEAGD YLGALSSDAT KLILGDSELN LVDTVDSAEQ VYSELLDKVE
101: SFVVNDSSDE IDKARRAVLV MCLAIATALW FTRCNLTGST EGSTKCSLPL RVSESKELVE WENWAKIQLM SVGSDLLGKF SNLQHLVFAR LLLFKLKDLL
201: FEITSTETFE VRSISWWLVR VLLIHQRVLQ ERSSSLFEML QVYMAEAIDH FGELEKVKSY WGANLLEDEA SSITSTIHLE ACVLQYIYGR IDPSRLQLES
301: AKAAASLEFS VTGALGFRTI HQVDPKAQMV LVANTSSSNG DVRLASEKAD VGPYEAWGGE APEVYMTPKL VNNESEAGKD SVPLKPVEQA LILAQCLLIE
401: RGSRHDEMQR WDMAPYIEAI DSQKSTYFVL RCFCDLLRVR WESTRGRTKG RALEMMDKLV GAINKSDPGV SNRIPLCYAV HLPTIPALRK EYGELLVSCG
501: LVGEAITIFE SLELWDNLIY CYCLLGKKSA AVDLINARLL ERPNDPRLWC SLGDVTINDS CYEKALEVSN DKSVRAKRAL ARSAYNRGDF EKSKMLWEAA
601: MALNSLYPDG WFALGAAALK ARDVQKALDA FTFAVQLDPD NGEAWNNIAC LHMIKKKSKE SFIAFKEALK FKRDSWQMWE NFSHVAMDVG NIDQAFEAIQ
701: QILKMSKNKR VDVVLLDRIM TELEKRNSAC KSSSSSTETE ASSDESTETK PCTATPAETQ RQLELLGKVI QQIVKTESTA EIWGLYARWS RIKGDLTVCS
801: EALLKQVRSY QGSEVWKDKE RFKKFARASL ELCRVYMEIS ASIGSKRELF TAEMHLKNTI KQATVSFLDS EELKELESCL EEVRNVMQKS EEEYRDTKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)