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AT5G16530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin efflux carrier family protein
Curator
Summary (TAIR10)
Encodes PIN5, an atypical member of the PIN family. PIN5 is a functional auxin transporter that is required for auxin-mediated development. PIN5 does not have a direct role in cell-to-cell transport but regulates intracellular auxin homeostasis and metabolism. PIN5 localizes, unlike other characterized plasma membrane PIN proteins, to endoplasmic reticulum (ER), presumably mediating auxin flow from the cytosol to the lumen of the ER.
Computational
Description (TAIR10)
PIN-FORMED 5 (PIN5); CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT5G15100.1); Has 2169 Blast hits to 1907 proteins in 543 species: Archae - 24; Bacteria - 1096; Metazoa - 104; Fungi - 0; Plants - 651; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).
Protein Annotations
BioGrid:16791eggNOG:ENOG410IGIJeggNOG:ENOG410YAQ9EMBL:AB005242EMBL:CP002688EnsemblPlants:AT5G16530EnsemblPlants:AT5G16530.1
entrez:831515GeneID:831515Genevisible:Q9FFD0GO:GO:0005783GO:GO:0005886GO:GO:0009555GO:GO:0009734
GO:GO:0009926GO:GO:0010252GO:GO:0010315GO:GO:0010329GO:GO:0016021GO:GO:0080161GO:GO:0080162
Gramene:AT5G16530.1hmmpanther:PTHR31752hmmpanther:PTHR31752:SF2HOGENOM:HOG000238224InParanoid:Q9FFD0InterPro:IPR004776InterPro:IPR014024
KEGG:ath:AT5G16530KO:K13947OMA:INRLVCYPaxDb:Q9FFD0Pfam:PF03547Pfam:Q9FFD0PhylomeDB:Q9FFD0
PRIDE:Q9FFD0PRO:PR:Q9FFD0ProteinModelPortal:Q9FFD0Proteomes:UP000006548RefSeq:NP_197157.4STRING:3702.AT5G16530.1TAIR:AT5G16530
tair10-symbols:PIN5TCDB:2.A.69.1.6TIGRfam:TIGR00946TIGRFAMs:TIGR00946TMHMM:TMhelixUniGene:At.54868UniProt:Q9FFD0
Coordinates (TAIR10) chr5:+:5400735..5402626
Molecular Weight (calculated) 38575.00 Da
IEP (calculated) 7.06
GRAVY (calculated) 0.78
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)