AT1G27440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.786 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9529265..9531213 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46845.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 412 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKIHSCLSAI LLFLFFSASS AKQNVRTERI SGSAGDVLED DPVGKLKVYV YELPSKYNKK LLQKDPRCLT HMFAAEIFMH RFLLSSPVRT RNPDEADWFY 101: TPIYPTCDLT PTGLPLPFKS PRMMRSSIQL ISSNWPYWNR TEGADHFFVV PHDFGACFHY QEEKAIERGI LPLLQRATLV QTFGQRNHVC LDEGSITIPP 201: FAPPQKMQAH FIPPDIPRSI FVYFRGLFYD VNNDPEGGYY ARGARAAVWE NFKNNPLFDI STDHPTTYYE DMQRAIFCLC PLGWAPWSPR LVEAVVFGCI 301: PVIIADDIVL PFADAIPWEE IGVFVAEKDV PELDTILTSI PTEVILRKQR LLANPSMKRA MLFPQPAQPG DAFHQILNGL ARKLPHDKSI YLKTGEKALN 401: WTAGPVADLK PW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)