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AT5G14170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SWIB/MDM2 domain superfamily protein
Curator
Summary (TAIR10)
CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Computational
Description (TAIR10)
CHC1; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT3G01890.1); Has 1254 Blast hits to 1169 proteins in 258 species: Archae - 0; Bacteria - 112; Metazoa - 460; Fungi - 424; Plants - 177; Viruses - 4; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
BioGrid:16545eggNOG:COG5531eggNOG:KOG2570EMBL:AB007650EMBL:AY065106EMBL:BT008892EMBL:CP002688
EnsemblPlants:AT5G14170EnsemblPlants:AT5G14170.1entrez:831267EvolutionaryTrace:Q9FMT4Gene3D:1.10.245.10GeneID:831267Genevisible:Q9FMT4
GO:GO:0005634GO:GO:0006281GO:GO:0006351GO:GO:0006355GO:GO:0009909GO:GO:0010224GO:GO:0010468
GO:GO:0016568GO:GO:0048364GO:GO:2000024Gramene:AT5G14170.1hmmpanther:PTHR13844hmmpanther:PTHR13844:SF13HOGENOM:HOG000240746
InParanoid:Q9FMT4IntAct:Q9FMT4InterPro:IPR003121InterPro:IPR019835iPTMnet:Q9FMT4KEGG:ath:AT5G14170KO:K11650
OMA:VQQQNRNPaxDb:Q9FMT4PDB:1V31PDBsum:1V31Pfam:PF02201Pfam:Q9FMT4PhylomeDB:Q9FMT4
PRIDE:Q9FMT4PRO:PR:Q9FMT4ProteinModelPortal:Q9FMT4Proteomes:UP000006548RefSeq:NP_196921.1SMART:SM00151SMR:Q9FMT4
STRING:3702.AT5G14170.1SUPFAM:SSF47592TAIR:AT5G14170tair10-symbols:CHC1UniGene:At.6512UniProt:Q9FMT4
Coordinates (TAIR10) chr5:-:4568696..4570444
Molecular Weight (calculated) 59273.90 Da
IEP (calculated) 10.09
GRAVY (calculated) -0.52
Length 534 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)