AT5G09860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nuclear matrix protein-related | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
THO1; CONTAINS InterPro DOMAIN/s: THO complex, subunit THOC1 (InterPro:IPR021861); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3066815..3070733 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68337.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 599 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAFRDAILQ RAPIETFALK TVQHFIQPQK QTKLAQDENQ MLENMLRTLL QELVAAAAQS GEQIMQYGQL IDDDDDDDDI HGQIPHLLDV VLYLCEKEHV 101: EGGMIFQLLE DLTEMSTMKN CKDVFGYIES KQDILGKQEL FARGKLVMLR TCNQLLRRLS KANDVVFCGR ILMFLAHFFP LSERSAVNIK GVFNTSNETK 201: YEKDPPKGIS VDFNFYKTFW SLQEYFCNPA SLTSASTKWQ KFSSSLAVVL NTFDAQPLSE EEGEANSLEE EAATFNIKYL TSSKLMGLEL KDSSFRRHIL 301: LQCLIMFDYL RAPGKNDKDL PSETMKEELK SCEDRVKKLL EITPPKGKEF LRAVEHILER EKNWVWWKRD GCPPFEKQPI DKKSPNAGQK KRRQRWRLGN 401: KELSQLWRWA DQNPNALTDS QRVRTPDIAD YWKPLAEDMD PSAGIEDEYH HKNNRVYCWK GLRFTARQDL EGFSRFTEMG IEGVVPVELL PPEVRSKYQA 501: KPNEKAKRAK KEETKGGSHE TEGNQIGVSN SEAEAEGGRG DAETMESDAI ADTPTPEEQQ RLGGSDTENG QEAGQIEDGE TEEAGLMDTD LDHPPMPVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)