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AT5G08310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 73334 Blast hits to 15617 proteins in 287 species: Archae - 3; Bacteria - 36; Metazoa - 297; Fungi - 561; Plants - 70696; Viruses - 0; Other Eukaryotes - 1741 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL392174EMBL:CP002688EnsemblPlants:AT5G08310EnsemblPlants:AT5G08310.1entrez:830727
GeneID:830727GO:GO:0005739Gramene:AT5G08310.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF342HOGENOM:HOG000083929InParanoid:P0C8Q6
InterPro:IPR002885iPTMnet:P0C8Q6KEGG:ath:AT5G08310OMA:PSWRHALPaxDb:P0C8Q6Pfam:P0C8Q6Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfscan:PS51375PhylomeDB:P0C8Q6PRIDE:P0C8Q6PRO:PR:P0C8Q6PROSITE:PS51375
ProteinModelPortal:P0C8Q6Proteomes:UP000006548RefSeq:NP_196448.2SMR:P0C8Q6STRING:3702.AT5G08310.1TAIR:AT5G08310TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.54778UniGene:At.75481UniProt:P0C8Q6
Coordinates (TAIR10) chr5:-:2672756..2675254
Molecular Weight (calculated) 94076.60 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.01
Length 832 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSRIALLC QRFSRQQQQR QLLHRPLTTK LDNTRFLHPN QSKLAQNLIV IFTRQPFSPD DPELLILSPE LNTKVVETVL NGFKRWGLAY LFFNWASKQE
101: GYRNDMYAYN AMASILSRAR QNASLKALVV DVLNSRCFMS PGAFGFFIRC LGNAGLVDEA SSVFDRVREM GLCVPNAYTY NCLLEAISKS NSSSVELVEA
201: RLKEMRDCGF HFDKFTLTPV LQVYCNTGKS ERALSVFNEI LSRGWLDEHI STILVVSFCK WGQVDKAFEL IEMLEERDIR LNYKTYCVLI HGFVKESRID
301: KAFQLFEKMR RMGMNADIAL YDVLIGGLCK HKDLEMALSL YLEIKRSGIP PDRGILGKLL CSFSEESELS RITEVIIGDI DKKSVMLLYK SLFEGFIRND
401: LVHEAYSFIQ NLMGNYESDG VSEIVKLLKD HNKAILPDSD SLSIVINCLV KANKVDMAVT LLHDIVQNGL IPGPMMYNNI IEGMCKEGRS EESLKLLGEM
501: KDAGVEPSQF TLNCIYGCLA ERCDFVGALD LLKKMRFYGF EPWIKHTTFL VKKLCENGRA VDACKYLDDV AGEGFLGHMV ASTAAIDGLI KNEGVDRGLE
601: LFRDICANGH CPDVIAYHVL IKALCKACRT MEADILFNEM VSKGLKPTVA TYNSMIDGWC KEGEIDRGLS CIVRMYEDEK NPDVITYTSL IHGLCASGRP
701: SEAIFRWNEM KGKDCYPNRI TFMALIQGLC KCGWSGEALV YFREMEEKEM EPDSAVYLSL VSSFLSSENI NAGFGIFREM VHKGRFPVSV DRNYMLAVNV
801: TSKFVEDLRT SCYLTCLIKD GRIPILAVVS RI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)