AT3G09040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 73401 Blast hits to 14698 proteins in 289 species: Archae - 0; Bacteria - 19; Metazoa - 251; Fungi - 280; Plants - 71776; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2761195..2764281 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115021.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1028 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MYFRVLLTPS SAMFDSFSFV RRLSYSPDLG RRIYGHVLPS HDQIHQRLLE ICLGQCKLFK SRKVFDEMPQ RLALALRIGK AVHSKSLILG IDSEGRLGNA 0101: IVDLYAKCAQ VSYAEKQFDF LEKDVTAWNS MLSMYSSIGK PGKVLRSFVS LFENQIFPNK FTFSIVLSTC ARETNVEFGR QIHCSMIKMG LERNSYCGGA 0201: LVDMYAKCDR ISDARRVFEW IVDPNTVCWT CLFSGYVKAG LPEEAVLVFE RMRDEGHRPD HLAFVTVINT YIRLGKLKDA RLLFGEMSSP DVVAWNVMIS 0301: GHGKRGCETV AIEYFFNMRK SSVKSTRSTL GSVLSAIGIV ANLDLGLVVH AEAIKLGLAS NIYVGSSLVS MYSKCEKMEA AAKVFEALEE KNDVFWNAMI 0401: RGYAHNGESH KVMELFMDMK SSGYNIDDFT FTSLLSTCAA SHDLEMGSQF HSIIIKKKLA KNLFVGNALV DMYAKCGALE DARQIFERMC DRDNVTWNTI 0501: IGSYVQDENE SEAFDLFKRM NLCGIVSDGA CLASTLKACT HVHGLYQGKQ VHCLSVKCGL DRDLHTGSSL IDMYSKCGII KDARKVFSSL PEWSVVSMNA 0601: LIAGYSQNNL EEAVVLFQEM LTRGVNPSEI TFATIVEACH KPESLTLGTQ FHGQITKRGF SSEGEYLGIS LLGMYMNSRG MTEACALFSE LSSPKSIVLW 0701: TGMMSGHSQN GFYEEALKFY KEMRHDGVLP DQATFVTVLR VCSVLSSLRE GRAIHSLIFH LAHDLDELTS NTLIDMYAKC GDMKGSSQVF DEMRRRSNVV 0801: SWNSLINGYA KNGYAEDALK IFDSMRQSHI MPDEITFLGV LTACSHAGKV SDGRKIFEMM IGQYGIEARV DHVACMVDLL GRWGYLQEAD DFIEAQNLKP 0901: DARLWSSLLG ACRIHGDDIR GEISAEKLIE LEPQNSSAYV LLSNIYASQG CWEKANALRK VMRDRGVKKV PGYSWIDVEQ RTHIFAAGDK SHSEIGKIEM 1001: FLEDLYDLMK DDAVVNPDIV EQGSLDCV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)