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AT5G04810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Pentatricopeptide repeat (InterPro:IPR002885), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 66261 Blast hits to 20285 proteins in 585 species: Archae - 7; Bacteria - 408; Metazoa - 3695; Fungi - 2485; Plants - 56206; Viruses - 140; Other Eukaryotes - 3320 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB008271EMBL:AF424618EMBL:AK229672EMBL:AL162972EMBL:CP002688
EnsemblPlants:AT5G04810EnsemblPlants:AT5G04810.1entrez:830360Gene3D:1.25.40.10Gene3D:3.30.70.330GeneID:830360Genevisible:Q0WMY5
GO:GO:0000166GO:GO:0003723GO:GO:0009507Gramene:AT5G04810.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF274HOGENOM:HOG000241136
InParanoid:Q0WMY5InterPro:IPR000504InterPro:IPR002885InterPro:IPR011990InterPro:IPR012677iPTMnet:Q0WMY5KEGG:ath:AT5G04810
ncoils:CoilOMA:CSKAGDMPaxDb:Q0WMY5Pfam:PF00076Pfam:PF01535Pfam:PF12854Pfam:PF13041
Pfam:PF13812Pfam:Q0WMY5Pfscan:PS50102Pfscan:PS51375PhylomeDB:Q0WMY5PIR:T48477PRIDE:Q0WMY5
PRO:PR:Q0WMY5PROSITE:PS50102PROSITE:PS51375ProteinModelPortal:Q0WMY5Proteomes:UP000006548RefSeq:NP_568141.2SMART:SM00360
SMR:Q0WMY5STRING:3702.AT5G04810.1SUPFAM:SSF54928SUPFAM:SSF81901TAIR:AT5G04810TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.20448UniProt:Q0WMY5
Coordinates (TAIR10) chr5:+:1390049..1393760
Molecular Weight (calculated) 106746.00 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.43
Length 952 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNGGSVLSL SAPHFPYSAT ILRRHSPVAS ISFSLKQPPP QPPEPPESPP DLRRPEKSIG SSSSSSSPSP IPSPKTPLKI NPLKGLTNRS SVSPLVQSEV
101: SSKVSSFGSS LASKLRLSSK LSPPPPPPPP PPVEETTQFR DEFRSDTKPP EEETRNPQQE FRQEGKIFVG NLPTWIKKPE FEEFFRQFGP IENVILIKGH
201: HEVEKNAGFG FIIYAAEKSA MKAVEFDGVE FHGRILTVKL DDGKRLKTKA EQRVRWVEEG EEDTKMSNKS SWHQEREGSR KSLQRILDTN GDNWQAVISA
301: FEKISKPSRT EFGLMVKFYG RRGDMHRARE TFERMRARGI TPTSRIYTSL IHAYAVGRDM DEALSCVRKM KEEGIEMSLV TYSVIVGGFS KAGHAEAADY
401: WFDEAKRIHK TLNASIYGKI IYAHCQTCNM ERAEALVREM EEEGIDAPIA IYHTMMDGYT MVADEKKGLV VFKRLKECGF TPTVVTYGCL INLYTKVGKI
501: SKALEVSRVM KEEGVKHNLK TYSMMINGFV KLKDWANAFA VFEDMVKEGM KPDVILYNNI ISAFCGMGNM DRAIQTVKEM QKLRHRPTTR TFMPIIHGYA
601: KSGDMRRSLE VFDMMRRCGC VPTVHTFNGL INGLVEKRQM EKAVEILDEM TLAGVSANEH TYTKIMQGYA SVGDTGKAFE YFTRLQNEGL DVDIFTYEAL
701: LKACCKSGRM QSALAVTKEM SARNIPRNSF VYNILIDGWA RRGDVWEAAD LIQQMKKEGV KPDIHTYTSF ISACSKAGDM NRATQTIEEM EALGVKPNIK
801: TYTTLIKGWA RASLPEKALS CYEEMKAMGI KPDKAVYHCL LTSLLSRASI AEAYIYSGVM TICKEMVEAG LIVDMGTAVH WSKCLCKIEA SGGELTETLQ
901: KTFPPDWSSH HHHHGFLDQV SDVDSDEDDV DGEDGEDDED VNSVSDLLSP YK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)