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AT5G02200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : far-red-elongated hypocotyl1-like
Curator
Summary (TAIR10)
Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.
Computational
Description (TAIR10)
far-red-elongated hypocotyl1-like (FHL); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyl 1 (TAIR:AT2G37678.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:830832eggNOG:ENOG410J1TAeggNOG:ENOG410Z2FQEMBL:AL162508
EMBL:CP002688EMBL:HM029243EnsemblPlants:AT5G02200EnsemblPlants:AT5G02200.1
entrez:830832GeneID:830832Gramene:AT5G02200.1hmmpanther:PTHR37723
HOGENOM:HOG000015156PIR:T48241Proteomes:UP000006548RefSeq:NP_195840.1
STRING:3702.AT5G02200.2TAIR:AT5G02200tair10-symbols:FHLUniGene:At.50419
UniProt:Q9LZL2
Coordinates (TAIR10) chr5:+:438221..438852
Molecular Weight (calculated) 20233.10 Da
IEP (calculated) 4.24
GRAVY (calculated) -0.49
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MIVAVESLDT SKKRKLHAEE SDLLPLPKHF CSEHQASLVN SSCPSSVIDY AECSYAMENT KTSDEASSSA SFTGPSLYMF KDSIYSTGSS SSGYAATSSI
101: EQCFSKVDHK TQEDTQDFTH MEFIYHDSEF AVEDLQEVLN PVESYILSSA RWSVSNQDSK EATTKPTIDQ EFEQYFSTLM M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)