AT2G37678.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : far-red elongated hypocotyl 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Positive regulator of photomorphogenesis in far-red light. Most abundant in young seedlings in the dark. Downregulated in the light and older as plants develop. Localized in the nucleus and the cytoplasm. Nuclear localization strongest in the dark. Degraded through the 26S proteasome. Regulated by PHYA. It is specifically required for the light-regulated nuclear accumulation of phyA but not phyB. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
far-red elongated hypocotyl 1 (FHY1); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: maintenance of protein location in nucleus, response to red or far red light, response to far red light, photomorphogenesis; LOCATED IN: nuclear body, nucleus, cytoplasm; EXPRESSED IN: hypocotyl; BEST Arabidopsis thaliana protein match is: far-red-elongated hypocotyl1-like (TAIR:AT5G02200.2); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15801689..15802696 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23014.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||
| Length | 202 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPEVEVDNNN EKPSEINSFH HMIISSSKNV LKMEEVEVSK KRKFQTDQSD ELSLLPLSKH TCFANVACSE NTNGNSEIDT EYSMSSYVNS TTSMECNNDI 101: EMKEESSGSC GEDKMISFES HLDYIYGTQN LEDFSEKVIE NILYLDEQEE EEEDAKGCSS NAAKFVLSSG RWTVNQDDST LHETKKPTID QEFEQYFSTL 201: ML |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)