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AT5G01210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.935
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HXXXD-type acyl-transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT2G39980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G01210-MONOMEReggNOG:ENOG410IEE2eggNOG:ENOG410YADFEMBL:AK227159EMBL:AL137189EMBL:AY056412EMBL:AY090321
EMBL:CP002688EnsemblPlants:AT5G01210EnsemblPlants:AT5G01210.1entrez:831901Gene3D:3.30.559.10GeneID:831901GO:GO:0016747
Gramene:AT5G01210.1hmmpanther:PTHR31896hmmpanther:PTHR31896:SF5HOGENOM:HOG000237787IntAct:Q9LFB5InterPro:IPR003480InterPro:IPR023213
KEGG:ath:AT5G01210OMA:DSIVIRCPfam:PF02458PhylomeDB:Q9LFB5PIR:T45961Proteomes:UP000006548RefSeq:NP_195741.1
SMR:Q9LFB5STRING:3702.AT5G01210.1SUPFAM:SSF52777TAIR:AT5G01210UniGene:At.25363UniGene:At.71680UniProt:Q9LFB5
Coordinates (TAIR10) chr5:+:84554..85981
Molecular Weight (calculated) 52334.00 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.22
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSCSVTEIS KCIVYPEKKS TVSDLRLSVS DLPMLSCHYI QKGVLLTSPP PSFSFDDLVS SLRRSLSSTL SLFPALAGRF STTPAGHISI VCNDAGVDFV
101: AASAKHVKLS DVLLPGEDVP LLFREFFVFE RLVSYNGHHK PLAAVQVTEL HDGVFIGCTV NHSVTDGTSF WHFFNTFADV TSGACKIKHL PDFSRHTVFD
201: SPVVLPVPPG GPRVTFDADQ PLRERIFHFS REAITKLKQR TNNRVNGIET AVNDGRKCNG EINGKITTVL DSFLNNKKSY DRTAEISSFQ SLSAQLWRSV
301: TRARNLDPSK TTTFRMAVNC RHRLEPKMDP YYFGNAIQSI PTLASAGDLL SKDLRWSAEQ LHRNVVAHDD ATVRRGIAAW ESDPRLFPLG NPDGASITMG
401: SSPRFPMYDN DFGWGKPLAV RSGGANKFDG KISAFPGREG NGSVDLEVVL APETMTGIEN DAEFMQYVSE VTYDC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)