AT1G52100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.842 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: shoot, cotyledon, hypocotyl, leaf; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT5G35940.1); Has 1742 Blast hits to 773 proteins in 43 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 4; Plants - 1729; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19383291..19385123 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47660.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.72 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 437 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALKVEAKGG KVGIQWDDGS DYHDVTKIYV RGGLEGIQFI KFEYVKAGKK VIGPIHGASG RGFTETFEIN NLEKEYLLSI EGYYNASTGV IQCLQFITNK 101: KTYDPIGYNE GARFTLSASR SKIIGFHGFA DKYLNSLGAY FIKIPSIQSA IEGAKTTGKG FDDGGDYDGI RKVYVTTDGS AIRHVRFDYD KAGQVETRER 201: GAKTGTQHEF TVNHPYEYIT SVEGTYAHTQ PYNCVVLTSL TFKTSKGRAS PAIGKVTGSK FKLERQGDAI VGFHGRVGSC IDGIGVYYAP LPPSPPPPEK 301: LQGQGGDGGD SWDDGAFKNV KKIYVGQGDV GIAAVKFEYE TYTSEVILAE RHGKETLLGY EDEYITAVEG CHDKVIGSET GVITMLRFKT NKRNSPPFGL 401: ESAFSFILEK DGHKIVGFHG KASTLLHQIG VHVTAIA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)