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AT4G35740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEAD/DEAH box RNA helicase family protein
Curator
Summary (TAIR10)
Encodes RECQ3, an ATP-dependent helicase.
Computational
Description (TAIR10)
RecQl3; FUNCTIONS IN: ATP binding, ATP-dependent helicase activity; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 32322 Blast hits to 32243 proteins in 2865 species: Archae - 544; Bacteria - 19123; Metazoa - 3830; Fungi - 3081; Plants - 1743; Viruses - 10; Other Eukaryotes - 3991 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1559-MONOMERBioCyc:ARA:GQT-1560-MONOMERBioGrid:15009EC:3.6.4.12eggNOG:COG0514eggNOG:KOG0351EMBL:AJ404472
EMBL:AK229155EMBL:AL031135EMBL:AL161588EMBL:CP002687EnsemblPlants:AT4G35740EnsemblPlants:AT4G35740.1entrez:829727
Gene3D:1.10.10.10Gene3D:3.40.50.300GeneID:829727Genevisible:Q9FT72GO:GO:0000733GO:GO:0005524GO:GO:0005634
GO:GO:0006310GO:GO:0008026GO:GO:0009378GO:GO:0032508GO:GO:0036310GO:GO:0043138GO:GO:0046872
hmmpanther:PTHR13710hmmpanther:PTHR13710:SF81HOGENOM:HOG000239549InParanoid:Q9FT72IntAct:Q9FT72InterPro:IPR001650InterPro:IPR004589
InterPro:IPR011545InterPro:IPR011991InterPro:IPR014001InterPro:IPR027417InterPro:IPR032284iPTMnet:Q9FT72KEGG:ath:AT4G35740
KO:K10901ncoils:CoilOMA:MENQVMAPaxDb:Q9FT72Pfam:PF00270Pfam:PF00271Pfam:PF16124
Pfam:Q9FT72Pfscan:PS51192Pfscan:PS51194PhylomeDB:Q9FT72PIR:T04679PRIDE:Q9FT72PRO:PR:Q9FT72
PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:Q9FT72Proteomes:UP000006548RefSeq:NP_195299.2RefSeq:NP_849500.1SMART:SM00487
SMART:SM00490SMR:Q9FT72STRING:3702.AT4G35740.1SUPFAM:SSF52540TAIR:AT4G35740tair10-symbols:ATRECQ3tair10-symbols:RecQl3
TIGRfam:TIGR00614TIGRFAMs:TIGR00614UniGene:At.20216UniProt:Q9FT72
Coordinates (TAIR10) chr4:+:16936233..16940172
Molecular Weight (calculated) 79948.50 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.46
Length 713 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)