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AT4G33760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNA synthetase class II (D, K and N) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tRNA synthetase class II (D, K and N) family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type (InterPro:IPR004524), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type, C-terminal (InterPro:IPR018153), GAD domain (InterPro:IPR004115); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink).
Protein Annotations
EC:6.1.1.12eggNOG:COG0173eggNOG:KOG2411EMBL:AK118754EMBL:AL031394EMBL:AL161584EMBL:CP002687
EnsemblPlants:AT4G33760EnsemblPlants:AT4G33760.1entrez:829518Gene3D:2.40.50.140Gene3D:3.30.1360.30GeneID:829518Genevisible:F4JJT9
GO:GO:0003677GO:GO:0004815GO:GO:0005524GO:GO:0005739GO:GO:0006418GO:GO:0009507GO:GO:0016020
GO:GO:0046872Gramene:AT4G33760.1gramene_pathway:6.1.1.12gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00044hmmpanther:PTHR22594hmmpanther:PTHR22594:SF5
InParanoid:F4JJT9InterPro:IPR002312InterPro:IPR004115InterPro:IPR004364InterPro:IPR004365InterPro:IPR004524InterPro:IPR006195
InterPro:IPR012340InterPro:IPR018150InterPro:IPR029351iPTMnet:F4JJT9KEGG:ath:AT4G33760KO:K01876OMA:YQLDVEM
PANTHER:PTHR22594PANTHER:PTHR22594:SF5PaxDb:F4JJT9Pfam:PF00152Pfam:PF01336Pfam:PF02938Pfscan:PS50862
PIR:T04993PRIDE:F4JJT9PRINTS:PR01042PRO:PR:F4JJT9PROSITE:PS50862ProteinModelPortal:F4JJT9Proteomes:UP000006548
RefSeq:NP_195102.2SMR:F4JJT9STRING:3702.AT4G33760.1SUPFAM:SSF50249SUPFAM:SSF55261SUPFAM:SSF55681TAIR:AT4G33760
TIGRfam:TIGR00459TIGRFAMs:TIGR00459UniGene:At.31557UniProt:F4JJT9
Coordinates (TAIR10) chr4:-:16189285..16193260
Molecular Weight (calculated) 74521.30 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.19
Length 664 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLLRTLPL RPTRFLSATA ISISNATNFF VVPKRTNPLP GTRRTFSSSP VAAASGDVVV KPVPSPPSVL RWVSRTELCG ELSVNDVGKR VHLCGWVALH
101: RVHGGLTFLN LRDHTGIVQV RTLPDEFPEA HGLINDMRLE YVVLVEGTVR SRPNESVNKK MKTGFVEVVA EHVEILNPVR TKLPFLVTTA DENKDLIKEE
201: IRLRFRCLDL RRQQMKNNIV LRHNVVKLIR RYLEDRHGFI EIETPILSRS TPEGARDYLV PSRIQSGTFY ALPQSPQLFK QMLMVSGFDK YYQIARCFRD
301: EDLRADRQPE FTQLDMEMAF MPMEDMLKLN EDLIRKVFSE IKGIQLPDPF PRLTYADAMD RYGSDRPDTR FDLELKDVSN VFTESSFRVF TEALESGGII
401: KVLCVPLGAK KYSNSALKKG DIYNEAMKSG AKGLPFLKVL DNGEIEGIAA LVSSLDSAGK INFVKQCGAA PGDLILFGVG PVTSVNKTLD RLRLFVAHDM
501: DLIDHSKHSI LWVTDFPMFE WNEPEQRLEA LHHPFTAPKP EDMDDLPSAR ALAYDMVYNG VEIGGGSLRI YKRDVQEKVL EIIGISPEEA ESKFGYLLEA
601: LDMGAPPHGG IAYGLDRMVM MLGGASSIRD VIAFPKTTTA QCALTRTPSE VDPKQLQDLS IRTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)