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AT4G33360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Encodes an NAD+-dependent dehydrogenase that oxidizes farnesol more efficiently than other prenyl alcohol substrates.
Computational
Description (TAIR10)
farnesol dehydrogenase (FLDH); FUNCTIONS IN: farnesol dehydrogenase activity; INVOLVED IN: terpenoid metabolic process, farnesol metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1); Has 32553 Blast hits to 32549 proteins in 3005 species: Archae - 643; Bacteria - 21240; Metazoa - 691; Fungi - 1000; Plants - 2475; Viruses - 74; Other Eukaryotes - 6430 (source: NCBI BLink).
Protein Annotations
BRENDA:1.1.1.354eggNOG:COG0451eggNOG:KOG1502EMBL:AF370578EMBL:AL035678EMBL:AL161583EMBL:BT002342
EMBL:CP002687EnsemblPlants:AT4G33360EnsemblPlants:AT4G33360.1entrez:829473ExpressionAtlas:Q9SZB3Gene3D:3.40.50.720GeneID:829473
GO:GO:0005773GO:GO:0005774GO:GO:0005783GO:GO:0005886GO:GO:0009788GO:GO:0016487GO:GO:0047886
GO:GO:0050662GO:GO:0055114Gramene:AT4G33360.1gramene_plant_reactome:1119620gramene_plant_reactome:6875728hmmpanther:PTHR10366hmmpanther:PTHR10366:SF400
HOGENOM:HOG000168005IntAct:Q9SZB3InterPro:IPR001509InterPro:IPR016040OMA:ERFFCTEPfam:PF01370PhylomeDB:Q9SZB3
PIR:T05987Proteomes:UP000006548RefSeq:NP_195062.1SMR:Q9SZB3STRING:3702.AT4G33360.1SUPFAM:SSF51735TAIR:AT4G33360
tair10-symbols:FLDHUniGene:At.46532UniGene:At.66644UniGene:At.68114UniProt:Q9SZB3
Coordinates (TAIR10) chr4:-:16067989..16069374
Molecular Weight (calculated) 37862.80 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.03
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MGPKMPNTET ENMKILVTGS TGYLGARLCH VLLRRGHSVR ALVRRTSDLS DLPPEVELAY GDVTDYRSLT DACSGCDIVF HAAALVEPWL PDPSRFISVN
101: VGGLKNVLEA VKETKTVQKI IYTSSFFALG STDGSVANEN QVHNERFFCT EYERSKAVAD KMALNAASEG VPIILLYPGV IFGPGKLTSA NMVARMLIER
201: FNGRLPGYIG SGTDRYSFSH VDDVVEGHVA AMEKGRLGER YLLTGENASF KLVFDMAALI TGTKKPNFSI PLWAINAYGW LSVLISRVTG KLPLISPPTV
301: TVLRHQWSYS CDKAKLELGY NPRSLKEGLE EMLPWLKSLG VIHY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)