AT4G33360.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an NAD+-dependent dehydrogenase that oxidizes farnesol more efficiently than other prenyl alcohol substrates. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
farnesol dehydrogenase (FLDH); FUNCTIONS IN: farnesol dehydrogenase activity; INVOLVED IN: terpenoid metabolic process, farnesol metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1); Has 32553 Blast hits to 32549 proteins in 3005 species: Archae - 643; Bacteria - 21240; Metazoa - 691; Fungi - 1000; Plants - 2475; Viruses - 74; Other Eukaryotes - 6430 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:16067989..16069374 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37862.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 344 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGPKMPNTET ENMKILVTGS TGYLGARLCH VLLRRGHSVR ALVRRTSDLS DLPPEVELAY GDVTDYRSLT DACSGCDIVF HAAALVEPWL PDPSRFISVN 101: VGGLKNVLEA VKETKTVQKI IYTSSFFALG STDGSVANEN QVHNERFFCT EYERSKAVAD KMALNAASEG VPIILLYPGV IFGPGKLTSA NMVARMLIER 201: FNGRLPGYIG SGTDRYSFSH VDDVVEGHVA AMEKGRLGER YLLTGENASF KLVFDMAALI TGTKKPNFSI PLWAINAYGW LSVLISRVTG KLPLISPPTV 301: TVLRHQWSYS CDKAKLELGY NPRSLKEGLE EMLPWLKSLG VIHY |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)