AT4G23510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.837 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: hypocotyl, male gametophyte, root; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G11340.1); Has 2769 Blast hits to 1483 proteins in 48 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 2762; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12267516..12270526 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72532.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.40 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||
| Length | 635 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNSSQSRKP QVFISFRGKA QRKTLVSFIK SKLEEISEIN VFMDEYEIRG RPITTLFERI RESSIALVIF SDKYPESRWC LDELVEIKKQ METGSIVPFP 101: IFYKVKAESV KNQTGHFRNV LLKTEEDVRK KVDRSNIRSI LETEDMIWGW RQALVSVGGR MGFSYNHKCD NDFVNDIVVQ IKKMLADLSP SPRNGLKIIE 201: RPQMHPQEEV TSLLQALNLK KSDLEDLIHI NGVVSHGTDR LVFLDLISLQ NPILADRLIE LVQAGRNLLV LLGSLEYYNK GFTFKRIFLP KKSQQLPGYT 301: VVAESNDNLR NHEVSYSDTV LTCFSFLCNI LKRSEMKIDP LSQRVFIGLG EKHLGKFLVS SLKEELESNQ ILVYVEDETK SRIKESGVAV VFFSKKYPNS 401: EKCLDELVEI KKLMDAGKID PLPVFYSLKD EPVKNLKGYF LNRLLKIENE VRKNIKTRDD KSILDTEAKI WGWRDALSSI ASRPGLSYEL STDDVFVSDI 501: VTKVNELFAS RERKKTEAAT TVVKTLDADD LFYSRTSFLQ AIDRDITDFE SFTDIPNGLV LLRLKGHTNL VFLKLSSHEN LLQVLYLLSL DFNKRGGEAE 601: SIVTSASGSI VAASSMFQPL DNSIRIDLNR QKYAT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)