suba logo
AT4G15420.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.964
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin fusion degradation UFD1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: proteolysis, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Peptidase, C-terminal, archaeal/bacterial (InterPro:IPR007280), Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G29070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5140eggNOG:KOG0701eggNOG:KOG1816EMBL:AF446353EMBL:AY086035EMBL:AY143927EMBL:CP002687
EMBL:DQ778953EnsemblPlants:AT4G15420EnsemblPlants:AT4G15420.1entrez:827213GeneID:827213GO:GO:0006511Gramene:AT4G15420.1
hmmpanther:PTHR12555hmmpanther:PTHR12555:SF14InterPro:IPR004854KEGG:ath:AT4G15420ncoils:CoilOMA:FHEPLQCPANTHER:PTHR12555
Pfam:PF03152Proteomes:UP000006548RefSeq:NP_567465.1SMR:Q8W1E7STRING:3702.AT4G15420.1TAIR:AT4G15420UniGene:At.4344
UniGene:At.71880UniProt:Q8W1E7
Coordinates (TAIR10) chr4:+:8823822..8825949
Molecular Weight (calculated) 62452.50 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.40
Length 561 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFELRSAKE KLEREQRERK QRAKLKLERE KKSKEAAIKQ REAIEAAQRA RRLDAIEAQI KADQHMQESL VSGDGIVFER VFQAVSFQGN GDKIKLPPSC
101: FTELSDQGAF DKGPLYFELS VVDHADNKKT THSGVLEFTA EDGTIGLPPH VWSNLFSTHD PMDVPLVEIR YIRLPKGSYA KLQPDNLGFS DLPNHKAILE
201: TILRQHATLS LDDVLLVNYG QVSYKLQVLE LRPATSISVL ETDIEVDIVS PDIVSDQPNQ HVLKPLQYGK SESGTVEEGR YDYYKFVIDE ATVEKVMAGS
301: VKVIVKVDVE KVGADTDLYV SKHPVLFPSL NQHEWSSHDV GSKTLILVSK ERALSSGTYS IGVYGFKGTV KYQVSVLVQE SIDGAKVGER AVSSSSDVDT
401: VECRNCKHSI PSRSIALHEV YCSRHNVVCN HHGCGIVLRV EEAKNHLHCE KCGKALQPTE MEKHLKVFHE PLTCGCGIVL EKEQMVQHQG KDCPLRLIAC
501: RFCGDMVEAG NSAADTRDRM RGMSEHESTC GSRTAPCDSC GRSVMLKDMD IHQIAVHGKS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)