AT4G15420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin fusion degradation UFD1 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: proteolysis, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Peptidase, C-terminal, archaeal/bacterial (InterPro:IPR007280), Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G29070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8823822..8825949 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62452.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.64 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFELRSAKE KLEREQRERK QRAKLKLERE KKSKEAAIKQ REAIEAAQRA RRLDAIEAQI KADQHMQESL VSGDGIVFER VFQAVSFQGN GDKIKLPPSC 101: FTELSDQGAF DKGPLYFELS VVDHADNKKT THSGVLEFTA EDGTIGLPPH VWSNLFSTHD PMDVPLVEIR YIRLPKGSYA KLQPDNLGFS DLPNHKAILE 201: TILRQHATLS LDDVLLVNYG QVSYKLQVLE LRPATSISVL ETDIEVDIVS PDIVSDQPNQ HVLKPLQYGK SESGTVEEGR YDYYKFVIDE ATVEKVMAGS 301: VKVIVKVDVE KVGADTDLYV SKHPVLFPSL NQHEWSSHDV GSKTLILVSK ERALSSGTYS IGVYGFKGTV KYQVSVLVQE SIDGAKVGER AVSSSSDVDT 401: VECRNCKHSI PSRSIALHEV YCSRHNVVCN HHGCGIVLRV EEAKNHLHCE KCGKALQPTE MEKHLKVFHE PLTCGCGIVL EKEQMVQHQG KDCPLRLIAC 501: RFCGDMVEAG NSAADTRDRM RGMSEHESTC GSRTAPCDSC GRSVMLKDMD IHQIAVHGKS S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)