suba logo
AT4G14840.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22520.1); Has 1681 Blast hits to 1532 proteins in 283 species: Archae - 19; Bacteria - 179; Metazoa - 579; Fungi - 131; Plants - 223; Viruses - 5; Other Eukaryotes - 545 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKXAeggNOG:ENOG411141YEMBL:AL161540EMBL:BT011686EMBL:BT012624EMBL:CP002687EMBL:Z97337
EnsemblPlants:AT4G14840EnsemblPlants:AT4G14840.1entrez:827141GeneID:827141Gramene:AT4G14840.1hmmpanther:PTHR33345hmmpanther:PTHR33345:SF3
HOGENOM:HOG000114091IntAct:O23339KEGG:ath:AT4G14840ncoils:CoilOMA:IDNNACNPhylomeDB:O23339PIR:E71411
Proteomes:UP000006548RefSeq:NP_193220.1SMR:O23339STRING:3702.AT4G14840.1TAIR:AT4G14840UniGene:At.33234UniProt:O23339
Coordinates (TAIR10) chr4:-:8511587..8513532
Molecular Weight (calculated) 62515.80 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.82
Length 555 amino acids
Sequence (TAIR10)
(BLAST)
001: MDMDQEIGQN SPGFDGESVV SMSNRSKETE PVPVENDYYR ENGFNSDGDG DDVKVNGDRS SFTDLNQLPA IPPASSGQGL PFAPVDFPSP GDVWTWRVGR
101: RVNNAGFHKD RLLILPERLK GKNVPKSFAS KNTLSRYLET SFPDMDANAF FASFTWNIPA LFQPAERVDA ASLFEETSKE GQNQDEDAED VKKEGSTSRY
201: SQRKRKQVQI QTNEPKATPR ASNRKKTATT TPAAEHKSAR ESSSKRYTRQ QQGDVFDLTE ENKESDAKKG SKRMKKRRGN YADEEEEEEA FVPHIYVSSM
301: NGVIAVSHPP VDINPEEFDS YLNSLENLLQ QQPSEAGQES SSSLPVSASS PVRDYEWTEA RMKLSSLLEK DFSSLFMSNE ATEMASLAAK LKKDPSLSAE
401: EIVRLKLIEE IPTFSEVFQE NQSMIVEADR FFSALELNKA KVASLKYEYS DLKDKLGNIQ TEVDRNSETI RQIDEQIAQL QAKRTELTRC ISNKGKEKVD
501: LIFGQKMVAN SIPKVVQEVQ AANLKKPEWE MKKDNALKRE SEILNKFAPL KGFYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)