AT4G22760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G45350.1); Has 39267 Blast hits to 14026 proteins in 231 species: Archae - 0; Bacteria - 16; Metazoa - 78; Fungi - 106; Plants - 38487; Viruses - 0; Other Eukaryotes - 580 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11960553..11962289 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64590.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.09 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 578 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLDSKLRFFL QRCVVLEQAK QVHAQLVVNR YNHLEPILVH QTLHFTKEFS RNIVTYVKRI LKGFNGHDSF SWGCLVRFLS QHRKFKETVD VYIDMHNSGI 101: PPSSHAVTSV LRACGKMENM VDGKPIHAQA LKNGLCGCVY VQTGLVGLYS RLGYIELAKK AFDDIAEKNT VSWNSLLHGY LESGELDEAR RVFDKIPEKD 201: AVSWNLIISS YAKKGDMGNA CSLFSAMPLK SPASWNILIG GYVNCREMKL ARTYFDAMPQ KNGVSWITMI SGYTKLGDVQ SAEELFRLMS KKDKLVYDAM 301: IACYTQNGKP KDALKLFAQM LERNSYIQPD EITLSSVVSA NSQLGNTSFG TWVESYITEH GIKIDDLLST SLIDLYMKGG DFAKAFKMFS NLNKKDTVSY 401: SAMIMGCGIN GMATEANSLF TAMIEKKIPP NVVTFTGLLS AYSHSGLVQE GYKCFNSMKD HNLEPSADHY GIMVDMLGRA GRLEEAYELI KSMPMQPNAG 501: VWGALLLASG LHNNVEFGEI ACSHCVKLET DPTGYLSHLA MIYSSVGRWD DARTVRDSIK EKKLCKTLGC SWVEGSYH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)