AT4G14590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.963 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : embryo defective 2739 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2739 (emb2739); CONTAINS InterPro DOMAIN/s: Integrator complex, subunit 3 (InterPro:IPR019333); Has 179 Blast hits to 170 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8374391..8375962 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59038.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.48 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||
| Length | 508 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENHFVTSKL IRVSLHEVEN QLELSLRQAF ENLQPKLRPP FSLELPDPQE YLELNKAIVY GVLCEPNSSK THIKHLHALV TDGYAFFTSL LIGIVVELYV 101: KLVDSAKIQL IWVTKEMIDV SSVGIEDLVV SLLRRIGISL FLEKWECLLD DSPLVLTSAL YSFLRLLADH YRVLGVVKLE NVKRLEIKFC VKMFREQLHL 201: SLKIGRDLIL LLQDLSHVSE FREIWNDLVS NHCSEIYQLK TSSRYFLLRI TPEMETQLRF LLGNVKLGSH KRHQIWFLKK FLLGPEKETL LIDIVRFVCC 301: VIHPTNEIIR SEIMPRWAII GWLLELCRQN HHIERSVMLA LFYDWLFFDE RIDNIMNVEP AALLMVWSIP QYPHITHSLL EFLLHLVETY DITRRDTIVR 401: GLTSAFREIE RKGVIRSLDI FLANPALAPD LKKKLANLLS CHQEKTVHVN LNQVSVLSKQ TVLSSEANLK DCSTKIVDTP DQKLDNSVEN PAKNHKVELF 501: KEFIRPSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)