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AT4G11840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phospholipase D gamma 3
Curator
Summary (TAIR10)
member of C2-PLD subfamily
Computational
Description (TAIR10)
phospholipase D gamma 3 (PLDGAMMA3); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 2 (TAIR:AT4G11830.2); Has 2125 Blast hits to 1669 proteins in 399 species: Archae - 2; Bacteria - 519; Metazoa - 437; Fungi - 453; Plants - 551; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G11840-MONOMERBioGrid:12088EC:3.1.4.4eggNOG:COG1502eggNOG:KOG1329EMBL:AL078606EMBL:AL161532
EMBL:CP002687EnsemblPlants:AT4G11840EnsemblPlants:AT4G11840.1entrez:826790Gene3D:2.60.40.150GeneID:826790Genevisible:Q9T052
GO:GO:0004630GO:GO:0005509GO:GO:0005737GO:GO:0016020GO:GO:0016042GO:GO:0046470GO:GO:0070290
Gramene:AT4G11840.1gramene_pathway:3.1.4.4gramene_pathway:LIPASYN-PWYgramene_pathway:PWY-3561hmmpanther:PTHR18896hmmpanther:PTHR18896:SF65HOGENOM:HOG000240112
InParanoid:Q9T052InterPro:IPR000008InterPro:IPR001736InterPro:IPR011402InterPro:IPR015679InterPro:IPR024632KEGG:00564+3.1.4.4
KEGG:00565+3.1.4.4KEGG:ath:AT4G11840KO:K01115PANTHER:PTHR18896PaxDb:Q9T052Pfam:PF00168Pfam:PF00614
Pfam:PF12357Pfam:Q9T052Pfscan:PS50004Pfscan:PS50035PhylomeDB:Q9T052PIR:T09343PIRSF:PIRSF036470
PRIDE:Q9T052PRO:PR:Q9T052PROSITE:PS50004PROSITE:PS50035ProteinModelPortal:Q9T052Proteomes:UP000006548RefSeq:NP_192921.1
SMART:SM00155SMART:SM00239SMR:Q9T052STRING:3702.AT4G11840.1SUPFAM:SSF49562SUPFAM:SSF56024TAIR:AT4G11840
tair10-symbols:PLDGAMMA3UniGene:At.48847UniProt:Q9T052
Coordinates (TAIR10) chr4:-:7122152..7125882
Molecular Weight (calculated) 97487.70 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.37
Length 866 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYHPVYNET MSMGGGSSNE FGQWLDKQLV PFDTSSGSLR VELLHGNLDI WVKEAKHLPN MDGFHNTLVG GMFFGLGRRN HKVDGENSSK ITSDPYVTVS
101: ISGAVIGRTF VISNSENPVW MQHFDVPVAH SAAKVHFVVK DSDIIGSQII GAVEIPTEQL CSGNRIEGLF PILNSRGKPC KQGAVLSLSI QYIPMERMRL
201: YQKGVGFGVE CVGVPGTYFP LRKGGRVTLY QDAHVDDGTL PSVHLDGGIQ YRHGKCWEDM ADAIRRARRL IYITGWSVFH PVRLVRRNND PTQGTLGELL
301: KVKSQEGVRV LVLVWDDPTS RSLLGFSTKG LMNTSDEETR RFFKHSSVQV LLCPRYGGKG HSFIKKSEVE TIYTHHQKTM IVDAEAAQNR RKIVAFVGGL
401: DLCNGRFDTP KHPLFRTLKT IHKDDFHNPN FVTTADDGPR EPWHDLHSKI DGPAAYDVLA NFEERWMKAS KPRGIGRLRT SSDDSLLRLD RIPDIMGLSE
501: ASSANDNDPE SWHVQVFRSI DSSSVKGFPK DPKEATGRNL LCGKNILIDM SIHAAYVKAI RSAQHFIYIE NQYFLGSSFN WDSNKNLGAN NLIPMEIALK
601: IANKIRAREK FAAYIVIPMW PEGAPTSNPI QRILYWQHKT MQMMYQTIYK ALVEVGLDGQ LEPQDFLNFF CLGTREVGTR EVPDGTVSVY NSPRKPPQLN
701: AAQVQALKSR RFMIYVHSKG MVVDDEFVLI GSANINQRSL EGTRDTEIAM GGYQPHHSWA KKGSRPRGQI FGYRMSLWAE HLGFLEQEFE EPENMECVRR
801: VRQLSELNWR QYAAEEVTEM PGHLLKYPVQ VDRTGKVSSL PGYETFPDLG GKIIGSFLVV EENLTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)