suba logo
AT4G03090.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.947
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sequence-specific DNA binding;sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding;sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); Has 162 Blast hits to 148 proteins in 59 species: Archae - 0; Bacteria - 10; Metazoa - 30; Fungi - 10; Plants - 59; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG8MeggNOG:ENOG410XTJ0EMBL:AC005275EMBL:AF069442EMBL:AL161496EMBL:CP002687EnsemblPlants:AT4G03090
EnsemblPlants:AT4G03090.1EnsemblPlants:AT4G03090.2entrez:828094ExpressionAtlas:F4JI44GeneID:828094Genevisible:F4JI44GO:GO:0003697
GO:GO:0005634GO:GO:0005730GO:GO:0009908GO:GO:0060195hmmpanther:PTHR35743hmmpanther:PTHR35743:SF1HOGENOM:HOG000084044
InParanoid:F4JI44InterPro:IPR001356iPTMnet:F4JI44KEGG:ath:AT4G03090OMA:NNEEMETPaxDb:F4JI44Pfscan:PS50071
PIR:T01384PRIDE:F4JI44PROSITE:PS50071ProteinModelPortal:F4JI44Proteomes:UP000006548RefSeq:NP_001190667.1RefSeq:NP_192218.5
SMART:SM00389STRING:3702.AT4G03090.1TAIR:AT4G03090UniGene:At.46863UniProt:F4JI44
Coordinates (TAIR10) chr4:-:1366495..1370937
Molecular Weight (calculated) 101572.00 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.24
Length 913 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRLLQPKHM VQAVNALHWR NSVEFHKLLK DNGDFSICFN SEQVLPQKIS VEKMVKMLPR HLIAVVMTPN KDGKSRYILC GIRLLQTLCD LTPRNAKLEQ
101: VLLDDVKLSA QMIDLVILVI IALGRNRKES CNSNKESLLE ATLVASCLHL FHGFISPNSQ DLVLVLLAHP RVDVFIDSAF GAVLNVVISL KAKLLYRQTD
201: SPKKLGASSV EEVNFHCQQA EAALQFLHSL CQHKPFRERV AKNKELCGKG GVLRLAQSIL SLTITPEFVG ATVTIASTSR MKAKVLSILQ HLFEAESVSF
301: LDEVANAGNL HLAKTVASEV LKLLRLGLSK ASMATASPDY PMGFVLLNAM RLADVLTDDS NFRSFFTEHF SMVLSAVFCL SHGDFLSMLC SSDLSSREDD
401: ANVDYDLFKS AGWILSVFSS SGQSVTPQFK LSLQNNLTMS SYAHQRTSLF IKMIANLHCF VPNVCQEQDR NRFIQNVMSG LRKDPSSILI KMLPGSSYTP
501: VAQRGTGVCR NLGSLLRHAE SLIPSSLNEE DFLLLRVFCD QLQPLIHSEF EESQVQVKVK KLFALLYIGF TILWLICLVT LIQDIEGRGG NLSGKLKELL
601: NLNNEEASED CDVRVEGVMT KQGVNEEIDT VERLKESDAD ASNLETSGSD TSSNRGKGLV EEGELVQNMS KRFKGSASGE VKEDEKSETF LVFEKQKKKR
701: KRSIMNADQM GMIEKALAEE PDLQRNSASR QLWADKISQK GSEVITSSQL KNWLNNRKAK LARANKQTGP AHDNNSSGDL PESPGDENTW QQKPSTPIKD
801: QTVTETPKTG ENLMRTSSSS EEGIKQGQQV RLMDERGDEI GKGTVLRTDG EWNGLSLETR QICVVDVMEL SESYDGSKKM IPYGSDDVGR TFTEANSRFG
901: VMRVAWDVNK LQY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)