AT4G01400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:573098..577243 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 125331.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||
| Length | 1110 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MIRRPIYDFA AVFRHLTSPL STSSRFLFYS SSEHEARKPI VSNPKSPIGS PTRVQKLIAS QSDPLLAKEI FDYASQQPNF RHSRSSHLIL ILKLGRGRYF 0101: NLIDDVLAKH RSSGYPLTGE IFTYLIKVYA EAKLPEKVLS TFYKMLEFNF TPQPKHLNRI LDVLVSHRGY LQKAFELFKS SRLHGVMPNT RSYNLLMQAF 0201: CLNDDLSIAY QLFGKMLERD VVPDVDSYKI LIQGFCRKGQ VNGAMELLDD MLNKGFVPDR TLIGGLCDQG MFDEGKKYLE EMISKGFSPH FSVSNCLVKG 0301: FCSFGKVEEA CDVVEVVMKN GETLHSDTWE MVIPLICNED ESEKIKLFLE DAVKEEITGD TRIVDVGIEN KKMPEIEQDD AAAETVDSST VKFGTPEALE 0401: YVRSLTDVGA MTRLLHECIA YQRSLDSDLD TLLSQRTELD RNLVQLQRSA EILDIVKADA DHMLGNVRST CDLADQVSGK VRELDLAQSR VNVTLSRIDA 0501: IVERGNCIEG VKTALESEDY ESAAKFVQRF LQIDLQYKDS GSDQSEQLHA SKEQLEGIAK KKLLAAIDQR DHPTILRFVR LYSPLGMETE GLQLYVGYLK 0601: KVIALRGRME YENVVELMEQ GLGQVNFVGC LTNLFKDIVM AIEENDEILR GLCGEDGVAY AICELQEECD LRGSLILKKY MDFRKLAILA SDINNSPNLN 0701: ILPGGASEGP DPREVELYVE EILSLMQLGE DYTEFMVSKI KSLTSVDPEL LPTATKAFRN KSFSKAIQDV TRYYVILEGF FMVENVRKAI RIDEHVPDSL 0801: TTSMVDDVFY VLQSCLRRAI STSNISSVIA VLSYAGSLLG NDYHEALQQK IREPNLGARL FLGGIGVENT GTEIATALNN MDVSCEYILK LKHEIEEQCT 0901: EVFPAPADRE RIKSCLSELG ELSSTFKQLL NSGMEQLVAT VTPRIRPVLD TVATISYELT ETEYAENEVN DPWVQRLLHS VETNAAWLQP LMTSNNYDSF 1001: LHLIIDFIVK RLEVIMMQKR FSQLGGLQLD RDTRALVSHF SGMTQRTVRD KFARLTQMAT ILNLEKVSEI LDFWGENSGP MTWRLTPAEV RRVLGLRVEF 1101: KPESIAALKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)