AT4G01270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01245.1); Has 5689 Blast hits to 5015 proteins in 477 species: Archae - 145; Bacteria - 387; Metazoa - 2946; Fungi - 366; Plants - 512; Viruses - 10; Other Eukaryotes - 1323 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:532351..534891 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56522.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.23 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEENAAGNA ICSICYEDLK PVVENLQSIS ACGHVFHELC LQQWFEYCPS TNKRNCPICK QKCSLKDPCR LYFQSSGNQT DSIASDKVVG IEEDPVLLRG 101: EVKRLEGKVQ NLTSALEAKK KENVEVSDKL HQCNEQLKED KVKRWEALQE ISTTQHLLKL KSEECIQLNS QCVKLQERTV ALAKELASLK LVSDLSLEED 201: DVLKLALLGN NAKTKDTIDT LVKSLVIRNR SYKELLAKCN QLGRGEARSS EKLEKALEKI EKLKKRMREL ELITEERENR ALRDINVSKK CSYTEVSEPA 301: IESMSSFRML SSDNKVEKIS TPPGKLEEKD GFTIQGSCLR GREDSFVSRT DSVIDVDDDY VPETNTSGIR DWNTNIEEKG DNSMVKDIKF NIRKDPTSSV 401: SPYSNGSGNI WQSSGTNRNL GRWSKHGERN EATPSLGGSV PRKDDLISIG PDGKGGRIKV LRSKPQISKT NASSGSGKRF KLGTKTSGSS SQGCLQIEHY 501: FGKTNR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)