AT1G67180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: transcription coactivators (TAIR:AT4G02110.1); Has 2482 Blast hits to 2442 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 1048; Fungi - 450; Plants - 465; Viruses - 61; Other Eukaryotes - 458 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25130099..25132169 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51932.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENVVATVSG YHGSDRFKLI KLISHSGASY VGAMSRSITH LVCWKFEGKK YDLAKKFGTV VVNHRWVEEC VKEGRRVSET PYMFDSGEEV GPLMIELPAV 101: SEEAKVTKKV NKASETFDKY FSNGGENRSG STSELATWME KNVEANRHSV RLRTKRPSSI LENKENSGVA ESSRKGKKRV VKQRSYRNLI DLESDEESDN 201: NHHDNSDENQ NETQDHREPA DENVRGFVFE QGETSALRHP GDLATPNWDV DEIEESENWS HSAVFKRPRS FSPEIKPQDD DESTREETEA TEKAPAQVSC 301: IICWTEFSSS RGILPCGHRF CYSCIQKWAD RLVSERKKTT CPLCKSNFIT ITKIEDADSS DQKIYSQTVP DLSSTNNILV VLPEEEEQRQ TLNPLTRASG 401: CSRCYLTEPE ELLIRCHLCN FRRIHSYCLD PYLLPWTCNH CNDLQMMYHR RNY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)