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AT3G60600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.500
plasma membrane 0.500
ASURE: endoplasmic reticulum,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27159525 (2016): endoplasmic reticulum
  • PMID:27159525 (2016): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18433157 (2008): nucleus
  • PMID:18433157 (2008): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vesicle associated protein
Curator
Summary (TAIR10)
Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.
Computational
Description (TAIR10)
vesicle associated protein (VAP); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1); Has 1108 Blast hits to 1074 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 446; Fungi - 141; Plants - 434; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
BioGrid:10545eggNOG:COG5066eggNOG:KOG0439EMBL:AK317675EMBL:AL162295EMBL:AY065144EMBL:AY085922
EMBL:AY364005EMBL:BT006297EMBL:BX822165EMBL:BX824970EMBL:CP002686EnsemblPlants:AT3G60600EnsemblPlants:AT3G60600.1
entrez:825231Gene3D:2.60.40.360GeneID:825231Genevisible:Q8VZ95GO:GO:0000326GO:GO:0005634GO:GO:0005783
GO:GO:0005789GO:GO:0005829GO:GO:0005886GO:GO:0016021GO:GO:0016032GO:GO:0032586GO:GO:0046907
hmmpanther:PTHR10809hmmpanther:PTHR10809:SF50HOGENOM:HOG000188310InParanoid:Q8VZ95IntAct:Q8VZ95InterPro:IPR000535InterPro:IPR008962
InterPro:IPR016763iPTMnet:Q8VZ95KEGG:ath:AT3G60600ncoils:CoilOMA:LIAMSNSPANTHER:PTHR10809PaxDb:Q8VZ95
Pfam:PF00635Pfam:Q8VZ95Pfscan:PS50202PhylomeDB:Q8VZ95PIR:T47871PIRSF:PIRSF019693PRIDE:Q8VZ95
PRO:PR:Q8VZ95PROSITE:PS50202ProteinModelPortal:Q8VZ95Proteomes:UP000006548RefSeq:NP_001030903.1RefSeq:NP_001030904.1RefSeq:NP_567101.1
SMR:Q8VZ95STRING:3702.AT3G60600.1SUPFAM:SSF49354SwissPalm:Q8VZ95TAIR:AT3G60600tair10-symbols:(AT)VAPtair10-symbols:VAP
tair10-symbols:VAP27tair10-symbols:VAP27-1TMHMM:TMhelixUniGene:At.4705UniProt:Q8VZ95
Coordinates (TAIR10) chr3:+:22400537..22402408
Molecular Weight (calculated) 28474.30 Da
IEP (calculated) 8.61
GRAVY (calculated) -0.42
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)