AT3G52050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 5'-3' exonuclease family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
5'-3' exonuclease family protein; FUNCTIONS IN: 5'-3' exonuclease activity, DNA binding, catalytic activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: 5'-3' exonuclease, SAM-fold domain (InterPro:IPR020047), 5'-3' exonuclease, N-terminal (InterPro:IPR002421), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), 5'-3' exonuclease, N-terminal resolvase-like domain (InterPro:IPR020046), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G34380.2); Has 9747 Blast hits to 9742 proteins in 2555 species: Archae - 3; Bacteria - 6179; Metazoa - 6; Fungi - 13; Plants - 105; Viruses - 31; Other Eukaryotes - 3410 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19305228..19309398 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46692.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.00 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 425 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLHLYHHSR FLWRNLCFPR SVGNLCNRNC SLISPSLARS AKYYCSSVAV SEFSNEAASG STLTSISEDV TPQSIKYPFK SEERVASTAA SSNGRVMLID 101: GTSIIYRAYY KLLARLNHGH LAHADGNADW VLTIFSSLSL LIDVLKFLPS HVAVVFDHDG VPYGTTSNSS TGYRSAKGMN FRHTLYPAYK SNRPPTPDTI 201: VQGLQYLKAS IKAMSIKVIE VPGVEADDVI GTLAMRSISA GFKVRVVSPD KDFFQILSPS LRLLRLTPRG SEMASFGMED FAKKFGNLEP AQFVDIIALA 301: GDKSDNIPGV DGIGNVHAVE LISRFGTLEN LLQSVDEIKE GKIKESLIAS ADQAILSKKL ALLRSDLPDY IVPFDTKDLT FKKPEDNGEK LSSLLIAIAD 401: YAEGFSADPV IRRAFRLWEK LEAVP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)