AT3G49000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA polymerase III subunit RPC82 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA polymerase III subunit RPC82 family protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III subunit RPC82-related, helix-turn-helix (InterPro:IPR013197), RNA polymerase III Rpc82, C -terminal (InterPro:IPR008806); Has 265 Blast hits to 257 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 106; Fungi - 69; Plants - 57; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18162903..18165846 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59339.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||
| Length | 523 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMSEFGIVY AIHIITVQFG SVVSKVCECL LRKGPLSSRD ISRLAESDIN HNKVKDILYL LIQHNCVQAF SIEPPDGSES KAIVQYIVLF NNILHRVRYN 101: KFSRIVNEEL DSKCGAVLDG LLSNGRLTLG QFIERDRDSG NTIGSEAIRD SLQKLVAARF VERIPSPEPV LGNKEKEPAK RRGAKAAKIL KEPETLEEQV 201: VEAATPVDAI RFPLIFEEDS NSSLADDNSN ITEGKRKQRD VDTSDSSSGV IWRPNFEEFI HRLRHKACVE IVKERRDEGC AIVLRAMLEV GRSQEKKVKT 301: DNSAPMSVGS IYEEVIKTEA GRTMLQERVE ACLDQLSATS SYLPAFVNEV NDSYIVDYKS IISVAQKDEI EAVVMRRYGK EAFRMFRYLS QEGRFVETDK 401: IADAALTEKK DTPQFLLKMW KDGYLHMQKL AVTAPGMYTP FLLWKVNKLI VTTQMLDEMY HASLNLSLRL AHELEAEKEL LLLPLDKLEG PLKERLKKVK 501: AKRLLLSSTM FKLDDAIMLF HDF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)