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AT3G48500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22616989 (2012): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PIGMENT DEFECTIVE 312 (PDE312); FUNCTIONS IN: RNA binding; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); Has 110 Blast hits to 108 proteins in 48 species: Archae - 0; Bacteria - 11; Metazoa - 5; Fungi - 14; Plants - 46; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF01eggNOG:ENOG410XTWNEMBL:AK229521EMBL:AL049659EMBL:AL133315EMBL:AY128335EMBL:CP002686
EnsemblPlants:AT3G48500EnsemblPlants:AT3G48500.1EnsemblPlants:AT3G48500.2entrez:824009ExpressionAtlas:F4JF21GeneID:824009Genevisible:F4JF21
GO:GO:0003676GO:GO:0009507hmmpanther:PTHR36371HOGENOM:HOG000238574InterPro:IPR003029InterPro:IPR012340KEGG:ath:AT3G48500
OMA:YVDKLWQPaxDb:F4JF21Pfscan:PS50126PIR:T46194PRIDE:F4JF21PRO:PR:F4JF21PROSITE:PS50126
ProteinModelPortal:F4JF21Proteomes:UP000006548RefSeq:NP_001078259.1RefSeq:NP_190419.3SMR:F4JF21STRING:3702.AT3G48500.2SUPFAM:SSF50249
TAIR:AT3G48500tair10-symbols:PDE312tair10-symbols:PTAC10UniGene:At.28078UniProt:F4JF21
Coordinates (TAIR10) chr3:+:17962209..17965408
Molecular Weight (calculated) 78818.40 Da
IEP (calculated) 4.70
GRAVY (calculated) -0.96
Length 668 amino acids
Sequence (TAIR10)
(BLAST)
001: MQICQTKLNF TFPNPTNPNF CKPKALQWSP PRRISLLPCR GFSSDEFPVD ETFLEKFGPK DKDTEDEARR RNWIERGWAP WEEILTPEAD FARKSLNEGE
101: EVPLQSPEAI EAFKMLRPSY RKKKIKEMGI TEDEWYAKQF EIRGDKPPPL ETSWAGPMVL RQIPPRDWPP RGWEVDRKEL EFIREAHKLM AERVWLEDLD
201: KDLRVGEDAT VDKMCLERFK VFLKQYKEWV EDNKDRLEEE SYKLDQDFYP GRRKRGKDYE DGMYELPFYY PGMVCEGTVT TLHLYQGAFV DIGGVHEGWV
301: PIKGNDWFWI RHFIKVGMHV IVEITAKRDP YRFRFPLELR FVHPNIDHMI FNKFDFPPIF HRDGDTNPDE IRRDCGRPPE PRKDPGSKPE EEGLLSDHPY
401: VDKLWQIHVA EQMILGDYEA NPAKYEGKKL SELSDDEDFD EQKDIEYGEA YYKKTKLPKV ILKTSVKELD LEAALTERQH HNKLMMEAKA RGEGYKIDKL
501: RRNIEMDEYD FLHWRRSLEE REALLRDISS RQALGLPLEE PGRYKPGSFF GKDQYDPTSA LYQYDYWGEP KNSEISKQER MKDAHNKSIV GKGNVWYDMS
601: YDDAIKQTIE KRKEGSTLAS QEEETESEEE EEDDDDFDDF DYSILSDESS IGYSEQQPLV NGTQVLTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)