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AT3G27120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27130.1); Has 33109 Blast hits to 30842 proteins in 3139 species: Archae - 1459; Bacteria - 13342; Metazoa - 4781; Fungi - 3652; Plants - 2738; Viruses - 26; Other Eukaryotes - 7111 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0464eggNOG:KOG0740EMBL:CP002686EnsemblPlants:AT3G27120EnsemblPlants:AT3G27120.1entrez:822331Gene3D:3.40.50.300
GeneID:822331GO:GO:0005524GO:GO:0016787Gramene:AT3G27120.1hmmpanther:PTHR23074hmmpanther:PTHR23074:SF17InParanoid:F4JEX5
InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960InterPro:IPR015415InterPro:IPR027417KEGG:ath:AT3G27120OMA:DDSTRTC
PaxDb:F4JEX5Pfam:PF00004Pfam:PF09336PRIDE:F4JEX5PROSITE:PS00674ProteinModelPortal:F4JEX5Proteomes:UP000006548
RefSeq:NP_189348.3scanprosite:PS00674SMART:SM00382SMR:F4JEX5STRING:3702.AT3G27120.1SUPFAM:SSF52540TAIR:AT3G27120
UniGene:At.53516UniGene:At.69202UniProt:F4JEX5
Coordinates (TAIR10) chr3:-:10000248..10003265
Molecular Weight (calculated) 52522.50 Da
IEP (calculated) 7.37
GRAVY (calculated) -0.53
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQAKLTSLY GNSIGKPDNQ RKTSVNNQDR ASDECVIVER SHGFGFGTKR PHAETSSLAN DGEVKEDGAP NGFVSAKIKL EMDVRQKRGS TESPSSCLSP
101: QSDKNALGRG YGSRSGGLRR GYRSNFVPPV KTNGNNVGNL TSRIGGKTDD ALDDSTRTCL EMLCGPDGEL PEKLRNLEPR LIEHVSNEIM DRDPNVRWDD
201: IAGLEHAKKC VTEMVIWPLL RPDIFKGCRS PGKGLLLFGP PGTGKTMIGK AIAGEAKATF FYISASSLTS KWIGEGEKLV RALFGVASCR QPAVIFVDEI
301: DSLLSQRKSD GEHESSRRLK TQFLIEMEGF DSGSEQILLI GATNRPQELD EAARRRLTKR LYIPLPSSEA RAWIIQNLLK KDGLFTLSDD DMNIICNLTE
401: GYSGSDMKNL VKDATMGPLR EALKRGIDIT NLTKDDMRLV TLQDFKDALQ EVRPSVSQNE LGIYENWNNQ FGSLSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)