AT3G27120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27130.1); Has 33109 Blast hits to 30842 proteins in 3139 species: Archae - 1459; Bacteria - 13342; Metazoa - 4781; Fungi - 3652; Plants - 2738; Viruses - 26; Other Eukaryotes - 7111 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10000248..10003265 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52522.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.37 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMQAKLTSLY GNSIGKPDNQ RKTSVNNQDR ASDECVIVER SHGFGFGTKR PHAETSSLAN DGEVKEDGAP NGFVSAKIKL EMDVRQKRGS TESPSSCLSP 101: QSDKNALGRG YGSRSGGLRR GYRSNFVPPV KTNGNNVGNL TSRIGGKTDD ALDDSTRTCL EMLCGPDGEL PEKLRNLEPR LIEHVSNEIM DRDPNVRWDD 201: IAGLEHAKKC VTEMVIWPLL RPDIFKGCRS PGKGLLLFGP PGTGKTMIGK AIAGEAKATF FYISASSLTS KWIGEGEKLV RALFGVASCR QPAVIFVDEI 301: DSLLSQRKSD GEHESSRRLK TQFLIEMEGF DSGSEQILLI GATNRPQELD EAARRRLTKR LYIPLPSSEA RAWIIQNLLK KDGLFTLSDD DMNIICNLTE 401: GYSGSDMKNL VKDATMGPLR EALKRGIDIT NLTKDDMRLV TLQDFKDALQ EVRPSVSQNE LGIYENWNNQ FGSLSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)