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AT3G24560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.449
plasma membrane 0.331
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Adenine nucleotide alpha hydrolases-like superfamily protein
Curator
Summary (TAIR10)
novel gene involved in embryogenesis
Computational
Description (TAIR10)
RASPBERRY 3 (RSY3); CONTAINS InterPro DOMAIN/s: PP-loop (InterPro:IPR011063); Has 1377 Blast hits to 1377 proteins in 336 species: Archae - 0; Bacteria - 610; Metazoa - 2; Fungi - 15; Plants - 23; Viruses - 0; Other Eukaryotes - 727 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0037eggNOG:ENOG410IDZMEMBL:AY040011EMBL:CP002686EnsemblPlants:AT3G24560EnsemblPlants:AT3G24560.1entrez:822052
ExpressionAtlas:Q94BN3GeneID:822052GO:GO:0005524GO:GO:0005737GO:GO:0008033GO:GO:0016879Gramene:AT3G24560.1
hmmpanther:PTHR11807hmmpanther:PTHR11807:SF2HOGENOM:HOG000083133InterPro:IPR011063InterPro:IPR012094KEGG:ath:AT3G24560PANTHER:PTHR11807:SF2
Pfam:PF01171PhylomeDB:Q94BN3Proteomes:UP000006548RefSeq:NP_566753.1STRING:3702.AT3G24560.2SUPFAM:SSF52402TAIR:AT3G24560
tair10-symbols:RSY3UniGene:At.48701UniGene:At.6252UniProt:Q94BN3
Coordinates (TAIR10) chr3:+:8964542..8966494
Molecular Weight (calculated) 51559.20 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.09
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MQMTSWMQAE LFILRLSRSS GVLGLAGTAF ASEIFSRNLQ LDAKHMKNQS IRLVRPLLDL WKEDMYKICQ WGRQDWVEDP TNRSQLFVRN RIRTSIGNLE
101: SGSFKSELQA VISECRRTRS FVDKVCTDLI HQTVTVTDKG YAILDLERLN PSGVKDICLS KYLFAVLQFI SQRQRPIRGN TSKLLLNYIR AIPCRTSLTA
201: AGCYLSPAPG SKGTKIIVSC SVDCPLPSKT ELLNISFNET PSDDLGQIIA DAKSFSDHVA PTSLFEVQFL DVASESVLSK ARELNLLSES TYTTIGLLQR
301: DETKRFLTKT EEKSVELEHG TNIAASSDKV HLCLGQNLYF MNRFLIRWNL SDHQCNEADC RNCPVSTATS MEVRHMVEPD WLYLAELSKC STSNHSISSS
401: QKALRSLKLI PAAARKSLPV LVNHCGLLLC IPAIGFSYCS CLEASAVFLP RIPLGGGHSS FL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)