AT5G19210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.917 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G58510.3); Has 29066 Blast hits to 29063 proteins in 2795 species: Archae - 157; Bacteria - 14563; Metazoa - 4524; Fungi - 3653; Plants - 2123; Viruses - 4; Other Eukaryotes - 4042 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6462100..6463687 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35459.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.23 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||
| Length | 315 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQVTKVARML AAKSEIDVKG CTVMALLDGG TLRRHKSWLK AEPPAILVAT VASLCHMLEK HIFRIDSVRV LVVDEVDFLF YSSKQVGSVR KLLTSFSSCD 101: KRQTVFASAS IPQHKHFVHD CIQQKWTKRD VVHVHVSAIM PMPLCLLHRF VMCEKTNKHQ VLLALLESDA PESAIIFVGE QSEKSKKAGN DPSTTLLMEF 201: LKTSYKGSLE ILLLEGDMNF NSRAASLTEI RQGGGFLLVS TDIAARGIDL PETTHIFNFD LPQTVTDYLH RAGRAGRKPF SDRKCIVANL ITSEERFVLQ 301: RYENELMFSC EEMML |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)