AT3G23840.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.980 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : HXXXD-type acyl-transferase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G13840.1); Has 1547 Blast hits to 1547 proteins in 88 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 7; Plants - 1538; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:8611177..8612559 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46431.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLVQEEGSG PVHGFRLSTV SASLPSETGT THEPTGLDLA MKLHYLKAVY IYSAGTARDL TVMDVKAPLF SVFYQIPCII GRFRRHESGR PYLKCNDCGT 101: RFVESHCDLT VEEWLRVPDR SVDESLVYHQ PVGPDLAFSP LLYIQMTRFS CGGLALGLSW AHIMGDPFSL SHFFNLWAQA FAGGKIYCPK TSVTERDFQN 201: PTSTFKKPDS VKQVDLVGDL WVAPNNSKMT TFSFNLTVND LKTHFPVNGD GEFEILTGII WKCVATVRGE SAPVTITVIR SDPKKLKPRA VRNGQMISSI 301: HVDFSVAEAS LEEIVKSIGE AKDERVVIDE IVDDVSDFIV YGANLTFVDM SEVDFYEAKV MGKSPESVYC NVQGIGDDGA VVVLPGVVEE ERVVTVTLPV 401: DEIEKVKWEM KKCGLITPLV |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)