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AT3G17670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : tetratricopeptide repeat (TPR)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 2265 Blast hits to 1732 proteins in 413 species: Archae - 65; Bacteria - 1306; Metazoa - 299; Fungi - 86; Plants - 156; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWDKeggNOG:ENOG4111QXZEMBL:AB022219EMBL:CP002686EnsemblPlants:AT3G17670EnsemblPlants:AT3G17670.1entrez:821034
ExpressionAtlas:Q9LUM9Gene3D:1.25.40.10Gene3D:3.40.30.10GeneID:821034Gramene:AT3G17670.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF368
HOGENOM:HOG000241116InterPro:IPR011990InterPro:IPR012336InterPro:IPR013026InterPro:IPR019734Pfam:PF13181Pfam:PF13414
Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q9LUM9PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_188394.2
SMART:SM00028SMR:Q9LUM9SUPFAM:SSF48452SUPFAM:SSF52833TAIR:AT3G17670UniGene:At.50193UniProt:Q9LUM9
Coordinates (TAIR10) chr3:+:6040857..6042012
Molecular Weight (calculated) 25418.70 Da
IEP (calculated) 7.88
GRAVY (calculated) -0.03
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSVALPAMS CRSSGEQVKE IRVCTNRTCR RQGSFQILET LTALAPPELR VTHCACLGRC GSGPNLVALP QGLILRHCAT PSRAAEILFS LCGDGREASS
101: SSAVTDALTA LALTNNALSQ IDAGNFSEAE ALLTQALELK PYGGLHRIFK HRSVAKLGML DYSGALEDIS QALALAPNYS EPYICQGDVY VAKGQYDLAE
201: KSYLTCLEID PSLRRSKPFK ARIAKLQQKV VELDVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)