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AT3G16785.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phospholipase D P1
Curator
Summary (TAIR10)
Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.
Computational
Description (TAIR10)
phospholipase D P1 (PLDP1); CONTAINS InterPro DOMAIN/s: Phospholipase D, eukaryota (InterPro:IPR016555), Pleckstrin homology-type (InterPro:IPR011993), Phospholipase D (InterPro:IPR015679), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phospholipase D P2 (TAIR:AT3G05630.1); Has 3214 Blast hits to 1855 proteins in 548 species: Archae - 2; Bacteria - 1049; Metazoa - 509; Fungi - 676; Plants - 827; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G16785-MONOMERBioCyc:MetaCyc:AT3G16785-MONOMERBRENDA:3.1.4.4EC:3.1.4.4eggNOG:COG1502eggNOG:KOG1329EMBL:AB022217
EMBL:AB028608EMBL:AF411833EMBL:CP002686EnsemblPlants:AT3G16785EnsemblPlants:AT3G16785.1entrez:820932Gene3D:2.30.29.30
GeneID:820932Genevisible:Q9LRZ5GO:GO:0004630GO:GO:0016023GO:GO:0016042GO:GO:0048364GO:GO:0070290
Gramene:AT3G16785.1hmmpanther:PTHR18896hmmpanther:PTHR18896:SF64HOGENOM:HOG000246972InParanoid:Q9LRZ5InterPro:IPR001736InterPro:IPR001849
InterPro:IPR011993InterPro:IPR015679InterPro:IPR025202iPTMnet:Q9LRZ5KEGG:00564+3.1.4.4KEGG:00565+3.1.4.4KEGG:ath:AT3G16785
KO:K01115ncoils:CoilOMA:RESCQDIPANTHER:PTHR18896PaxDb:Q9LRZ5Pfam:PF00614Pfam:PF13091
Pfam:Q9LRZ5Pfscan:PS50003Pfscan:PS50035PhylomeDB:Q9LRZ5PRIDE:Q9LRZ5PRO:PR:Q9LRZ5PROSITE:PS50003
PROSITE:PS50035ProteinModelPortal:Q9LRZ5Proteomes:UP000006548Reactome:R-ATH-1483166Reactome:R-ATH-2029485RefSeq:NP_188302.2SMART:SM00155
SMART:SM00233STRING:3702.AT3G16785.1SUPFAM:SSF50729SUPFAM:SSF56024TAIR:AT3G16785tair10-symbols:PLD ZETA 1tair10-symbols:PLDP1
tair10-symbols:PLDZ1tair10-symbols:PLDZETA1UniGene:At.21958UniProt:Q9LRZ5
Coordinates (TAIR10) chr3:+:5711329..5718696
Molecular Weight (calculated) 124512.00 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.45
Length 1096 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASEQLMSPA SGGGRYFQMQ PEQFPSMVSS LFSFAPAPTQ ETNRIFEELP KAVIVSVSRP DAGDISPVLL SYTIECQYKQ FKWQLVKKAS QVFYLHFALK
0101: KRAFIEEIHE KQEQVKEWLQ NLGIGDHPPV VQDEDADEVP LHQDESAKNR DVPSSAALPV IRPLGRQQSI SVRGKHAMQE YLNHFLGNLD IVNSREVCRF
0201: LEVSMLSFSP EYGPKLKEDY IMVKHLPKFS KSDDDSNRCC GCCWFCCCND NWQKVWGVLK PGFLALLEDP FDAKLLDIIV FDVLPVSNGN DGVDISLAVE
0301: LKDHNPLRHA FKVTSGNRSI RIRAKNSAKV KDWVASINDA ALRPPEGWCH PHRFGSYAPP RGLTDDGSQA QWFVDGGAAF AAIAAAIENA KSEIFICGWW
0401: VCPELYLRRP FDPHTSSRLD NLLENKAKQG VQIYILIYKE VALALKINSV YSKRRLLGIH ENVRVLRYPD HFSSGVYLWS HHEKLVIVDN QVCFIGGLDL
0501: CFGRYDTFEH KVGDNPSVTW PGKDYYNPRE SEPNTWEDAL KDELERKKHP RMPWHDVHCA LWGPPCRDVA RHFVQRWNYA KRNKAPYEDS IPLLMPQHHM
0601: VIPHYMGRQE ESDIESKKEE DSIRGIRRDD SFSSRSSLQD IPLLLPHEPV DQDGSSGGHK ENGTNNRNGP FSFRKSKIEP VDGDTPMRGF VDDRNGLDLP
0701: VAKRGSNAID SEWWETQDHD YQVGSPDETG QVGPRTSCRC QIIRSVSQWS AGTSQVEESI HSAYRSLIDK AEHFIYIENQ FFISGLSGDD TVKNRVLEAL
0801: YKRILRAHNE KKIFRVVVVI PLLPGFQGGI DDSGAASVRA IMHWQYRTIY RGHNSILTNL YNTIGVKAHD YISFYGLRAY GKLSEDGPVA TSQVYVHSKI
0901: MIVDDRAALI GSANINDRSL LGSRDSEIGV LIEDTELVDS RMAGKPWKAG KFSSSLRLSL WSEHLGLRTG EIDQIIDPVS DSTYKEIWMA TAKTNTMIYQ
1001: DVFSCVPNDL IHSRMAFRQS LSYWKEKLGH TTIDLGIAPE KLESYHNGDI KRSDPMDRLK AIKGHLVSFP LDFMCKEDLR PVFNESEYYA SPQVFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)