AT2G16405.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.972 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 17028 Blast hits to 11710 proteins in 500 species: Archae - 20; Bacteria - 2780; Metazoa - 6091; Fungi - 3873; Plants - 2093; Viruses - 0; Other Eukaryotes - 2171 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7105915..7108787 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53968.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.98 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||
| Length | 482 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEKNGSSEV EIGEKDETKK QSKDLEFLSC MMQPKTADSD PHYIGIRRIL LHRKADSGVI SRRYDWRCNG KGYVAYRNFI SKPRKWENLR TPSLLSSPGN 101: SGRWLPSPSP LSHQFEAESF TSSRDLRSVN QVSSRRASFS SSLSDGDNSY RRGGVEHAYS FVGMHCIFDQ CKSSVTVLKF GHMSSDILAY GASDGSLTVC 201: SLLEEPSVLK QLTGHSKDVT DFDFSSNNQY IASSSLDKTI RVWELSRGVC IRVIYGISPQ YCIRFHPVNN NFLSAGNANK ELTVFNFSTG RIIKKLLFED 301: EVTSMDHDHT GQIIFCGDGQ GTVYSVSMDS HTGSLSRSHR HRTNHKSPVT TVKYRSFSLL ASGPVLLTCT QDGNLSFFSV ALQIKGYLTL RCSLKLAPRI 401: HRIQASFCPL LSLEKGEYIV AGSEDSNVYF YDLTKPKHTC VNKLQGHRFP VMCVAWNHGE NLLASSDFYG VVIVWKRAKT SS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)