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AT3G16330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:820880eggNOG:ENOG410J19NeggNOG:ENOG410YR0AEMBL:AB023046EMBL:AC001645EMBL:AK119052EMBL:BT006210
EMBL:CP002686EnsemblPlants:AT3G16330EnsemblPlants:AT3G16330.1entrez:820880GeneID:820880Gramene:AT3G16330.1hmmpanther:PTHR33265
hmmpanther:PTHR33265:SF8HOGENOM:HOG000237616InterPro:IPR008480KEGG:ath:AT3G16330OMA:GNIVRFVPfam:PF05553PhylomeDB:O04324
Proteomes:UP000006548RefSeq:NP_188254.1STRING:3702.AT3G16330.1TAIR:AT3G16330UniGene:At.38910UniProt:O04324
Coordinates (TAIR10) chr3:+:5535263..5535880
Molecular Weight (calculated) 22857.10 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.55
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKNISISKK LGNIVRFVLY MLHKGISKQK LLADFNATLK RGKNLMFHNR RRVPGSAVAS HPQNEYEFSC SDTPNYTFPF NMAAFKKKSH HNSLFSCGQA
101: PPTLDDDTSV SRAVLELLNS GGDHDQGSNT PAFSIEALTA LSPYLPGFGR STSSVRPLRV TDSPFPLREE GDVANGHVDK AADEFIKKFY KNLYQQKKMI
201: ESSPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)