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AT3G15840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : post-illumination chlorophyll fluorescence increase
Curator
Summary (TAIR10)
Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.
Computational
Description (TAIR10)
post-illumination chlorophyll fluorescence increase (PIFI); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chlororespiration; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II2MeggNOG:ENOG4111HI9EMBL:AB017071EMBL:AY035025EMBL:AY133879EMBL:CP002686EnsemblPlants:AT3G15840
EnsemblPlants:AT3G15840.1entrez:820827ExpressionAtlas:Q9LVZ5GeneID:820827GO:GO:0009507GO:GO:0009570GO:GO:0009579
GO:GO:0010478Gramene:AT3G15840.1hmmpanther:PTHR32429hmmpanther:PTHR32429:SF9IntAct:Q9LVZ5OMA:KLTPNEQPhylomeDB:Q9LVZ5
Proteomes:UP000006548RefSeq:NP_566528.1STRING:3702.AT3G15840.1TAIR:AT3G15840tair10-symbols:PIFIUniGene:At.24608UniProt:Q9LVZ5
Coordinates (TAIR10) chr3:-:5356782..5358418
Molecular Weight (calculated) 29692.40 Da
IEP (calculated) 5.88
GRAVY (calculated) -0.34
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)