AT3G23400.1::SUBA5

AT3G23400.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plastid 1.000
What is SUBAcon?

Predictors

External Curations

AmiGO : nucleus 14617066
AmiGO : plasma membrane 16618929
AmiGO : plastid 14729914
AmiGO : plastid 15028209
AmiGO : plastid 15322131
AmiGO : plastid 16414959
AmiGO : plastid 16461379
AmiGO : plastid 18431481
SwissProt : plastid 16381842
SwissProt : cytosol 16381842
TAIR : plastid 15028209
TAIR : plastid 16414959
TAIR : plastid 16461379
TAIR : plastid 15322131
TAIR : nucleus 14617066
TAIR : plasma membrane 16618929

Experimental Localisations and PPI

FP	MS/MS	PPI
PMID:16414959 (2006): plastid plastid stroma	PMID:31975158 (2020): plastid PMID:31932409 (2020): plastid PMID:31818904 (2020): mitochondrion PMID:31615849 (2019): plastid plastid thylakoid PMID:31520498 (2020): mitochondrion PMID:30962257 (2019): plastid PMID:30135097 (2018): plastid PMID:29967049 (2018): plastid PMID:29104584 (2017): nucleus nuclear matrix nucleolus PMID:28865150 (2017): extracellular region plant-type cell wall PMID:27943495 (2017): mitochondrion PMID:27895226 (2016): plastid PMID:27137770 (2016): plastid plastid stroma PMID:25900983 (2015): Golgi PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane PMID:25900983 (2015): Golgi trans-Golgi network PMID:25900983 (2015): Golgi trans-Golgi network early endosome PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body PMID:25641898 (2015): plasma membrane PMID:24872594 (2014): plastid plastid thylakoid PMID:24872594 (2014): plastid plastid envelope PMID:24124904 (2013): plastid PMID:23851315 (2013): plastid PMID:23673981 (2013): plastid plastid stroma plastoglobules PMID:23549413 (2013): plastid PMID:23390424 (2013): plastid plastid envelope PMID:22923678 (2012): plasma membrane PMID:22550958 (2012): plastid PMID:22274653 (2012): plastid plastid stroma plastoglobules PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane PMID:21531424 (2011): plastid PMID:21311031 (2011): plastid PMID:20423899 (2010): plastid PMID:20061580 (2010): plastid plastid thylakoid PMID:20061580 (2010): plastid plastid envelope PMID:19334764 (2009): plasma membrane PMID:18633119 (2008): plastid plastid thylakoid PMID:18431481 (2008): plastid plastid thylakoid PMID:18431481 (2008): plastid plastid stroma PMID:16648217 (2006): plastid PMID:16618929 (2006): plasma membrane PMID:16461379 (2006): plastid plastid stroma plastoglobules PMID:16414959 (2006): plastid plastid stroma plastoglobules PMID:15322131 (2004): plastid PMID:15028209 (2004): plastid PMID:14729914 (2004): plastid PMID:14617066 (2003): nucleus PMID:11826309 (2002): plastid PMID:11719511 (2002): plastid	PMID:20049866 (2010): AT3G27925.1:None: PMID:20049866 (2010): AT1G12250.1:None: PMID:20049866 (2010): AT5G46390.1:None: PMID:20049866 (2010): AT5G64040.1:None: PMID:20049866 (2010): AT4G18370.1:None: PMID:20049866 (2010): AT4G17740.1:None: PMID:20049866 (2010): AT3G50820.1:None: PMID:20049866 (2010): AT3G01480.1:None: PMID:20049866 (2010): AT1G06680.1:None: PMID:20049866 (2010): AT1G08550.1:None: PMID:20049866 (2010): AT5G66570.1:None: PMID:20049866 (2010): AT3G26060.1:None: PMID:20049866 (2010): AT3G56650.1:None: PMID:20049866 (2010): AT4G09010.1:None: PMID:20049866 (2010): AT3G63540.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT5G07020.1 plastid [7.37] AT4G25130.1 plastid [6.3] AT1G63970.1 plastid [6.3] AT2G30950.1 plastid [6.03] AT1G53670.1 plastid [6.01] AT1G32220.1 plastid [5.85] AT5G65840.1 plastid [5.81] AT5G60600.1 plastid [5.69] AT5G37360.1 plastid [5.65] AT4G29670.1 plastid [5.61]	AT1G06680.1 plastid AT1G08550.1 plastid AT1G12250.1 plastid AT3G01480.1 plastid AT3G26060.1 plastid AT3G27925.1 plastid AT3G50820.1 plastid AT3G56650.1 plastid AT3G63540.1 plastid AT4G09010.1 plastid AT4G17740.1 plastid AT4G18370.1 plastid AT5G46390.1 plastid AT5G64040.1 plastid AT5G66570.1 plastid

Description (TAIR10)

protein_coding : Plastid-lipid associated protein PAP / fibrillin family protein

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

fibrillin 4 (FIB4); FUNCTIONS IN: structural molecule activity; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 367 Blast hits to 365 proteins in 76 species: Archae - 0; Bacteria - 87; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

Protein Annotations

BioGrid:7253	eggNOG:ENOG410II8J	eggNOG:ENOG4111H8W	EMBL:AB015474
EMBL:AY086921	EMBL:AY383618	EMBL:BT024911	EMBL:CP002686
EnsemblPlants:AT3G23400	EnsemblPlants:AT3G23400.1	entrez:821921	GeneID:821921
Genevisible:Q9LW57	GO:GO:0005634	GO:GO:0005886	GO:GO:0009507
GO:GO:0009534	GO:GO:0009535	GO:GO:0009579	GO:GO:0009658
GO:GO:0009941	GO:GO:0010193	GO:GO:0010287	GO:GO:0016020
GO:GO:0031977	GO:GO:0042742	Gramene:AT3G23400.1	hmmpanther:PTHR31906
hmmpanther:PTHR31906:SF15	HOGENOM:HOG000240662	IntAct:Q9LW57	InterPro:IPR006843
iPTMnet:Q9LW57	KEGG:ath:AT3G23400	OMA:CKIKITF	PaxDb:Q9LW57
Pfam:PF04755	Pfam:Q9LW57	PhylomeDB:Q9LW57	PRIDE:Q9LW57
PRO:PR:Q9LW57	PROSITE:PS00213	ProteinModelPortal:Q9LW57	Proteomes:UP000006548
RefSeq:NP_566728.1	STRING:3702.AT3G23400.1	TAIR:AT3G23400	tair10-symbols:FIB4
UniGene:At.5610	UniProt:Q9LW57

Coordinates (TAIR10)

chr3:-:8376636..8378225

Molecular Weight (calculated)

30456.20 Da

IEP (calculated)

5.90

GRAVY (calculated)

-0.19

Length

284 amino acids

Sequence (TAIR10)
(BLAST)

001: MATSSTFSSL LPSPPALLSD HRSPPPSIRY SFSPLTTPKS SRLGFTVPEK RNLAANSSLV EVSIGGESDP PPSSSGSGGD DKQIALLKLK LLSVVSGLNR
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGTCKIKI TFEKTTVKTS GNLSQIPPFD IPRLPDSFRP SSNPGTGDFE VTYVDDTMRI TRGDRGELRV FVIA