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AT3G13782.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nucleosome assembly protein1;4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleosome assembly protein1;4 (NAP1;4); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: response to cadmium ion, nucleosome assembly, nucleotide-excision repair; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1;2 (TAIR:AT2G19480.3); Has 1671 Blast hits to 1646 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1036; Fungi - 206; Plants - 209; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQN9eggNOG:KOG1507EMBL:AP001307EMBL:CP002686EnsemblPlants:AT3G13782EnsemblPlants:AT3G13782.1entrez:820589
GeneID:820589Genevisible:F4JEI8GO:GO:0005634GO:GO:0005737GO:GO:0006334GO:GO:0042393Gramene:AT3G13782.1
hmmpanther:PTHR11875hmmpanther:PTHR11875:SF63InParanoid:F4JEI8IntAct:F4JEI8InterPro:IPR002164KEGG:ath:AT3G13782KO:K11279
OMA:ENENEMDPANTHER:PTHR11875PaxDb:F4JEI8Pfam:F4JEI8Pfam:PF00956PRIDE:F4JEI8PRO:PR:F4JEI8
ProteinModelPortal:F4JEI8Proteomes:UP000006548RefSeq:NP_187993.2SMR:F4JEI8STRING:3702.AT3G13782.1SUPFAM:SSF143113TAIR:AT3G13782
tair10-symbols:NAP1;4tair10-symbols:NFA04tair10-symbols:NFA4UniGene:At.39344UniProt:F4JEI8
Coordinates (TAIR10) chr3:+:4526660..4528398
Molecular Weight (calculated) 36419.70 Da
IEP (calculated) 4.27
GRAVY (calculated) -0.65
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNEENIKSD NKSGDSSDLP TIPALDIGAE ECDLLAELKN LTLKRPFDVK KLSPKVTKRV LFLKDIQVTH DELEEKFLAE KSALEATYDN LYKPLFAKRY
101: EIVNGVVEAE AEKEGVPNFW LIAMKTNEML ANEITERDEA ALKYLKDIRS CRVEDTSRNF KLEFLFDSNL YFKNSVLSKT YHVNDEDGPV LEKVIGTDIE
201: WFPGKCLTHK VVVKKKTKKG PKKVNNIPMT KTENCESFFN FFKPPEIPEI DEVDDYDDFD TIMTEELQNL MDQDYDIAVT IRDKLIPHAV SWFTGEALVD
301: EDDSDDNDDD DNDEKSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)