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AT3G12490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cystatin B
Curator
Summary (TAIR10)
Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).
Computational
Description (TAIR10)
cystatin B (CYSB); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity, cobalt ion binding; INVOLVED IN: response to abiotic stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381); BEST Arabidopsis thaliana protein match is: Cystatin/monellin family protein (TAIR:AT5G05110.1); Has 755 Blast hits to 732 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 0; Plants - 721; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G12490EnsemblPlants:AT3G12490.1entrez:820428hmmpanther:PTHR11413hmmpanther:PTHR11413:SF55Pfam:PF00031scanprosite:PS00287
SUPFAM:SSF54403tair10-symbols:ATCYS6tair10-symbols:ATCYSBtair10-symbols:CYSB
Coordinates (TAIR10) chr3:-:3960523..3961777
Molecular Weight (calculated) 22478.60 Da
IEP (calculated) 6.38
GRAVY (calculated) -0.60
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MALVGGVGDV PANQNSGEVE SLARFAVDEH NKKENALLEF ARVVKAKEQV VAGTLHHLTL EILEAGQKKL YEAKVWVKPW LNFKELQEFK PASDAPAITS
101: SDLGCKQGEH ESGWREVPGD DPEVKHVAEQ AVKTIQQRSN SLFPYELLEV VHAKAEVTGE AAKYNMLLKL KRGEKEEKFK VEVHKNHEGA LHLNHAEQHH
201: D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)