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AT3G12040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.627
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-3-methyladenine glycosylase (MAG)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-3-methyladenine glycosylase (MAG); FUNCTIONS IN: DNA binding, alkylbase DNA N-glycosylase activity, catalytic activity; INVOLVED IN: base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methylpurine-DNA glycosylase (MPG) (InterPro:IPR003180), Formyl transferase, C-terminal-like (InterPro:IPR011034); Has 2384 Blast hits to 2384 proteins in 1044 species: Archae - 26; Bacteria - 1995; Metazoa - 85; Fungi - 6; Plants - 30; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12040-MONOMERDNASU:820378EC:3.2.2.21eggNOG:COG2094eggNOG:KOG4486EMBL:AC069473EMBL:AP002040
EMBL:CP002686EMBL:X76169EnsemblPlants:AT3G12040EnsemblPlants:AT3G12040.1entrez:820378Gene3D:3.10.300.10GeneID:820378
Genevisible:Q39147GO:GO:0003677GO:GO:0005634GO:GO:0006284GO:GO:0008725GO:GO:0043916GO:GO:0052821
GO:GO:0052822Gramene:AT3G12040.1HAMAP:MF_00527hmmpanther:PTHR10429hmmpanther:PTHR10429:SF0HOGENOM:HOG000224224InParanoid:Q39147
InterPro:IPR003180InterPro:IPR011034KEGG:ath:AT3G12040KO:K03652OMA:FFARSVHPANTHER:PTHR10429PaxDb:Q39147
Pfam:PF02245Pfam:Q39147PhylomeDB:Q39147PRIDE:Q39147PRO:PR:Q39147ProteinModelPortal:Q39147Proteomes:UP000006548
Reactome:R-ATH-110331Reactome:R-ATH-110357RefSeq:NP_187811.1SMR:Q39147STRING:3702.AT3G12040.1SUPFAM:SSF50486TAIR:AT3G12040
TIGRfam:TIGR00567TIGRFAMs:TIGR00567UniGene:At.5389UniProt:Q39147
Coordinates (TAIR10) chr3:-:3835349..3836781
Molecular Weight (calculated) 28135.10 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.34
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTPARRSKR VNQEESETNV TTRVVLRTRK TNCSKTRAAR VRPDYPLTRT TSESEMKLMP PEFFQIDALD LAPRLLGKFM RRDNVVLRIT EVEAYRPNDS
101: ACHGRFGVTP RTAPVFGPGG HAYVYLCYGL HMMLNIVADK EGVGAAVLIR SCSPVSGMET IQERRGLKTD KPVLLNGPGK VGQALGLSTE WSHHPLYSPG
201: GLELLDGGED VEKVMVGPRV GIDYALPEHV NALWRFAVAD TPWISAPKNT LKPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)