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AT3G11110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.637
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: stem, cotyledon, leaf whorl, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G27940.1); Has 9317 Blast hits to 9293 proteins in 287 species: Archae - 0; Bacteria - 0; Metazoa - 2264; Fungi - 653; Plants - 5062; Viruses - 56; Other Eukaryotes - 1282 (source: NCBI BLink).
Protein Annotations
BioGrid:5616eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC009991EMBL:AC073395EMBL:BT031381EMBL:CP002686
EnsemblPlants:AT3G11110EnsemblPlants:AT3G11110.1entrez:820282Gene3D:3.30.40.10GeneID:820282Genevisible:Q9SRM0GO:GO:0008270
GO:GO:0016021GO:GO:0016567Gramene:AT3G11110.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF100HOGENOM:HOG000238431InParanoid:Q9SRM0
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT3G11110OMA:LYWHENQPaxDb:Q9SRM0Pfam:PF13639Pfam:Q9SRM0
Pfscan:PS50089PhylomeDB:Q9SRM0PRIDE:Q9SRM0PRO:PR:Q9SRM0PROSITE:PS50089ProteinModelPortal:Q9SRM0Proteomes:UP000006548
RefSeq:NP_187722.1SMART:SM00184SMR:Q9SRM0SUPFAM:SSF57850TAIR:AT3G11110TMHMM:TMhelixUniGene:At.53265
UniPathway:UPA00143UniProt:Q9SRM0
Coordinates (TAIR10) chr3:+:3479979..3480455
Molecular Weight (calculated) 18090.70 Da
IEP (calculated) 6.49
GRAVY (calculated) -0.23
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSSPSPQA SMLLYWHENQ YDDRNFQIHG RTLFFALALF SVVLFFALLT LYIHRNCLPR DSINLHASSP DRLTRCRSGG LDPAEIRSLP VVLCRRERAE
101: EEEEKECCIC LGGFEEGEKM KVLPPCSHCY HCECVDRWLK TESSCPLCRV SIRVDSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)