AT4G18740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rho termination factor | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rho termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112); Has 186 Blast hits to 184 proteins in 65 species: Archae - 0; Bacteria - 29; Metazoa - 45; Fungi - 8; Plants - 65; Viruses - 9; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10303543..10304479 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27326.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.64 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||
| Length | 245 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLALHCHCA YPLIKLGFMR AKSANHLHVR DTHSLPFALR FEQSLSRTTI NGDRSIWFQE KGGSSYTSMG RSKKGCVCCK KPSDRRTSNP SKSNQEEIIS 101: LLKRIQSSIS KGESRGVEEE KNSDESSKEK PLTKAILDVL EKSRKKTEGD TSVKEKPPKR QVELPRPPSS FVKRTPLSSS ASGPRGKLPV SNSDKALGKL 201: TKKEEKASLI ETMKLAELKE VAKNRGIKGY SKLRKSELLE LIRSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)