AT3G09210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plastid transcriptionally active 13 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
plastid transcriptionally active 13 (PTAC13); FUNCTIONS IN: transcription elongation regulator activity; INVOLVED IN: positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), Translation protein SH3-like, subgroup (InterPro:IPR014722), KOW (InterPro:IPR005824); Has 3797 Blast hits to 3795 proteins in 1334 species: Archae - 0; Bacteria - 2562; Metazoa - 0; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 1202 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2825422..2826850 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37493.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.26 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||
| Length | 333 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMKLQGGLLQ WSRSSLIPSI YTPINKTQFS IAACVIERNH QLTAKERRQL RNERRESKLG YSWREEVEEK LIKKPKKRYA TWTEELNLDT LAESGPQWWA 101: VRVSRLRGHE TAQILARALA RQFPEMEFTV YAPSVQVKRK LKNGSISVKP KPVFPGCIFI RCILNKEIHD SIRDVDGVGG FIGSKVGNTK RQINKPRPVD 201: DSDLEAIFKQ AKEAQEKADS EFEEADRAEE EASILASQEL LALSNSDVIE TVAESKPKRA PRKATLATET KAKKKKLAAG STVRVLSGTF AEFVGNLKKL 301: NRKTAKATVG FTLFGKETLV EIDINELVPE IQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)